Z. japonica Nagirizaki
Zjn_sc00012.1.g04630.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G20240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 151 1 145 6e-46 137.7 57.6 73.5
Subject 208 1 139
Annot | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208
NR ref|XP_004962034.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 151 1 150 1e-70 142.4 88.1 93.4
Subject 215 1 143
Annot PREDICTED: MADS-box transcription factor 4-like [Setaria italica]
IRGSP Os05t0423400-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 151 1 150 6e-69 142.4 85.4 91.4
Subject 215 1 148
Annot
Sbicolor Sobic.009G142500.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 151 1 150 3e-70 140.4 84.1 91.4
Subject 212 1 143
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g04630.1.sm.mk length: 151 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.6e-28 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.1e-24 9-59
HMMSmart SM00432 no description 3.2e-39 1-60
ProfileScan PS50066 MADS_BOX_2 31.721 1-61
superfamily SSF55455 SRF-like 2.3e-33 2-96
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 2.3e-14 71-145
ProfileScan PS51297 K_BOX 9.376 84-151
no_ID  
Coil coil coiled-coil NA 84-105
HMMPanther PTHR11945 MADS 9.6e-94 1-145
HMMPanther PTHR11945:SF97 AGL51, 9.6e-94 1-145
Pseudomolecule
Chromosome Start End Strand
1788656258866376-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker_non_over exon 1812433 1812620 . + . ID=Zjn_sc00012.1.g04630.1.sm.mk:exon:1
Zjn_sc00012.1 maker_non_over exon 1812715 1812781 . + . ID=Zjn_sc00012.1.g04630.1.sm.mk:exon:2
Zjn_sc00012.1 maker_non_over exon 1812867 1812946 . + . ID=Zjn_sc00012.1.g04630.1.sm.mk:exon:3
Zjn_sc00012.1 maker_non_over exon 1813064 1813184 . + . ID=Zjn_sc00012.1.g04630.1.sm.mk:exon:4

Top