Z. japonica Nagirizaki
Zjn_sc00012.1.g04220.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT5G16440.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
63 |
274 |
e-104 |
106.2 |
63.5 |
71.9 |
| Subject |
291 |
64 |
291 |
|
| Annot |
| Symbols: IPP1 | isopentenyl diphosphate isomerase 1 | chr5:5371765-5373575 FORWARD LENGTH=291 |
| NR |
ref|XP_008649644.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
2 |
274 |
e-121 |
108 |
83.9 |
91.2 |
| Subject |
296 |
3 |
296 |
|
| Annot |
PREDICTED: isopentenyl-diphosphate Delta-isomerase I-like [Zea mays] gi|413945361|gb|AFW78010.1| hypothetical protein ZEAMMB73_793684 [Zea mays] |
| IRGSP |
Os05t0413400-02_chr05_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
12 |
274 |
e-112 |
106.9 |
75.5 |
83.9 |
| Subject |
293 |
14 |
293 |
|
| Annot |
|
| Sbicolor |
Sobic.009G137700.1.p|Chr09|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
274 |
39 |
274 |
e-120 |
115.3 |
78.1 |
82.5 |
| Subject |
316 |
43 |
316 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00012.1.g04220.1.sm.mkhc |
length: 274 aa. |
| IPR000086 |
NUDIX hydrolase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| HMMPfam |
PF00293 |
NUDIX |
3.1e-26 |
94-242 |
| ProfileScan |
PS51462 |
NUDIX |
16.837 |
92-244 |
| IPR011876 |
Isopentenyl-diphosphate delta-isomerase, type 1 |
| Molecular Function |
GO:0004452 |
isopentenyl-diphosphate delta-isomerase activity |
|
|
| Biological Process |
GO:0008299 |
isoprenoid biosynthetic process |
|
|
| HMMPIR |
PIRSF018427 |
Isopentenyldiphosphate |
7.5e-94 |
46-271 |
| HMMPanther |
PTHR10885 |
ISOPENTENYL-DIPHOSPHATE |
7.1e-113 |
63-274 |
| HMMTigr |
TIGR02150 |
IPP_isom_1: |
1.4e-47 |
76-245 |
| IPR015797 |
NUDIX hydrolase domain-like |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| Gene3D |
G3DSA:3.90.79.10 |
no description |
1.6e-50 |
78-259 |
| superfamily |
SSF55811 |
Nudix |
2.3e-33 |
69-259 |
| no_ID |
|
| HMMPanther |
PTHR10885:SF0 |
ISOPENTENYL-DIPHOSPHATE |
7.1e-113 |
63-274 |
| Seg |
seg |
seg |
NA |
2-62 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 17 | 9023153 | 9026929 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00012.1 |
maker |
exon |
1651880 |
1652200 |
. |
+ |
. |
ID=Zjn_sc00012.1.g04220.1.sm.mkhc:exon:1 |
| Zjn_sc00012.1 |
maker |
exon |
1653922 |
1654021 |
. |
+ |
. |
ID=Zjn_sc00012.1.g04220.1.sm.mkhc:exon:2 |
| Zjn_sc00012.1 |
maker |
exon |
1654653 |
1654755 |
. |
+ |
. |
ID=Zjn_sc00012.1.g04220.1.sm.mkhc:exon:3 |
| Zjn_sc00012.1 |
maker |
exon |
1654864 |
1655001 |
. |
+ |
. |
ID=Zjn_sc00012.1.g04220.1.sm.mkhc:exon:4 |
| Zjn_sc00012.1 |
maker |
exon |
1655138 |
1655656 |
. |
+ |
. |
ID=Zjn_sc00012.1.g04220.1.sm.mkhc:exon:5 |