Z. japonica Nagirizaki
Zjn_sc00012.1.g03980.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G15560.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 727 37 719 0.0 98.6 79 85
Subject 717 44 716
Annot | Symbols: CLA1, DEF, CLA, DXS, DXPS2 | Deoxyxylulose-5-phosphate synthase | chr4:8884218-8887254 FORWARD LENGTH=717
NR gb|ACG27905.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 727 1 727 0.0 98.9 92.6 95
Subject 719 1 719
Annot 1-deoxy-D-xylulose-5-phosphate synthase [Zea mays]
IRGSP Os05t0408900-04_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 727 1 727 0.0 99 89.5 94.1
Subject 720 1 720
Annot
Sbicolor Sobic.009G135500.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 727 1 727 0.0 99.3 92.3 94.8
Subject 722 1 722
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g03980.1.sm.mk length: 727 aa.
IPR005474 Transketolase, N-terminal
method AccNumber shortName E-value location
PatternScan PS00801 TRANSKETOLASE_1 NA 98-117
IPR005475 Transketolase-like, pyrimidine-binding domain
HMMPfam PF02779 Transket_pyr 3.4e-43 395-556
HMMSmart SM00861 Transketolase, 1e-68 395-560
IPR005476 Transketolase, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF02780 Transketolase_C 6.1e-30 574-704
IPR005477 Deoxyxylulose-5-phosphate synthase
Molecular Function GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity    
Biological Process GO:0016114 terpenoid biosynthetic process    
HAMAP MF_00315 DXP_synth 42.384 72-713
HMMPfam PF13292 DXP_synthase_N 2.4e-109 73-358
HMMTigr TIGR00204 dxs: 1.4e-229 75-712
IPR009014 Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
superfamily SSF52922 TK 1.3e-33 570-713
IPR015941 Transketolase-like, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.40.50.920 no description 2e-32 573-712
IPR020826 Transketolase binding site
PatternScan PS00802 TRANSKETOLASE_2 NA 501-517
no_ID  
Gene3D G3DSA:3.40.50.970 no description 2.6e-35 315-409
410-559
HMMPanther PTHR11624 DEHYDROGENASE 0 76-727
HMMPanther PTHR11624:SF20 1-DEOXYXYLULOSE-5-PHOSPHATE 0 76-727
Seg seg seg NA 51-65
262-273
superfamily SSF52518 Thiamin 8.5e-64 70-457
391-584
Pseudomolecule
Chromosome Start End Strand
1791197499122847+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker_non_over exon 1555962 1556123 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:9
Zjn_sc00012.1 maker_non_over exon 1556173 1556189 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:8
Zjn_sc00012.1 maker_non_over exon 1556213 1556501 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:7
Zjn_sc00012.1 maker_non_over exon 1556591 1556872 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:6
Zjn_sc00012.1 maker_non_over exon 1557004 1557311 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:5
Zjn_sc00012.1 maker_non_over exon 1557403 1557676 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:4
Zjn_sc00012.1 maker_non_over exon 1557916 1558338 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:3
Zjn_sc00012.1 maker_non_over exon 1558522 1558816 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:2
Zjn_sc00012.1 maker_non_over exon 1558927 1559060 . - . ID=Zjn_sc00012.1.g03980.1.sm.mk:exon:1

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