Z. japonica Nagirizaki
Zjn_sc00012.1.g03920.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G78580.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 310 144 302 3e-35 303.9 28.1 38.1
Subject 942 767 940
Annot | Symbols: ATTPS1, TPS1 | trehalose-6-phosphate synthase | chr1:29552495-29557482 REVERSE LENGTH=942
NR ref|XP_008654210.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 310 139 310 3e-66 309.7 44.2 49
Subject 960 784 954
Annot PREDICTED: trehalose-6-phosphate synthase isoform X1 [Zea mays] gi|670427065|ref|XP_008654211.1| PREDICTED: trehalose-6-phosphate synthase isoform X1 [Zea mays] gi|413949839|gb|AFW82488.1| trehalose-6-phosphate synthase [Zea mays] gi|571040792|gb|AHF23013.1| trehalose-6-phosphate synthase isform a [Zea mays] gi|571040794|gb|AHF23014.1| trehalose-6-phosphate synthase isform b [Zea mays]
IRGSP Os05t0518600-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 310 1 50 2e-22 74.8 15.5 15.8
Subject 232 140 189
Annot
Sbicolor Sobic.009G200200.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 310 139 310 7e-67 315.2 44.8 49
Subject 977 798 970
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g03920.1.sm.mkhc length: 310 aa.
IPR001830 Glycosyl transferase, family 20
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005992 trehalose biosynthetic process    
HMMPfam PF00982 Glyco_transf_20 5.5e-12 1-52
52-84
IPR003337 Trehalose-phosphatase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005992 trehalose biosynthetic process    
HMMPfam PF02358 Trehalose_PPase 5.4e-06 141-201
no_ID  
Gene3D G3DSA:3.40.50.2000 no description 5e-13 1-52
53-85
HMMPanther PTHR10788 TREHALOSE-6-PHOSPHATE 1.4e-30 1-84
Seg seg seg NA 213-251
superfamily SSF53756 UDP-Glycosyltransferase/glycogen 1.6e-25 1-84
Pseudomolecule
Chromosome Start End Strand
1791504069154546-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 1524263 1524413 . + . ID=Zjn_sc00012.1.g03920.1.sm.mkhc:exon:1
Zjn_sc00012.1 maker exon 1524937 1525037 . + . ID=Zjn_sc00012.1.g03920.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 1526298 1526477 . + . ID=Zjn_sc00012.1.g03920.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 1527192 1527290 . + . ID=Zjn_sc00012.1.g03920.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 1527802 1528403 . + . ID=Zjn_sc00012.1.g03920.1.sm.mkhc:exon:5

Top