Z. japonica Nagirizaki
Zjn_sc00012.1.g03770.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G32810.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 499 33 498 0.0 114.2 61.1 74.7
Subject 570 81 569
Annot | Symbols: CCD8, MAX4, ATCCD8 | carotenoid cleavage dioxygenase 8 | chr4:15828348-15831299 FORWARD LENGTH=570
NR gb|AKR76311.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 499 26 498 0.0 108.2 70.7 81.2
Subject 540 48 536
Annot carotenoid cleavage dioxygenase 8 [Saccharum hybrid cultivar ROC22]
IRGSP Os01t0746400-00_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 499 31 498 0.0 114 70.7 80
Subject 569 81 564
Annot
Sbicolor Sobic.003G293600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 499 31 498 0.0 116 70.1 80
Subject 579 91 574
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g03770.1.sm.mk length: 499 aa.
IPR004294 Carotenoid oxygenase
method AccNumber shortName E-value location
HMMPanther PTHR10543 BETA-CAROTENE 1.7e-202 12-498
HMMPfam PF03055 RPE65 1.2e-90 46-497
no_ID  
HMMPanther PTHR10543:SF6 BETA-CAROTENE 1.7e-202 12-498
Seg seg seg NA 399-410
Pseudomolecule
Chromosome Start End Strand
1792111389213067+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker_non_over exon 1465742 1465858 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:6
Zjn_sc00012.1 maker_non_over exon 1465881 1465988 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:5
Zjn_sc00012.1 maker_non_over exon 1466095 1466284 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:4
Zjn_sc00012.1 maker_non_over exon 1466382 1466575 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:3
Zjn_sc00012.1 maker_non_over exon 1466663 1467418 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:2
Zjn_sc00012.1 maker_non_over exon 1467537 1467671 . - . ID=Zjn_sc00012.1.g03770.1.sm.mk:exon:1

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