Z. japonica Nagirizaki
Zjn_sc00012.1.g03380.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G64060.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 927 17 924 0.0 101.8 68.8 79.7
Subject 944 9 909
Annot | Symbols: ATRBOH F, ATRBOHF, RBOHAP108, RBOHF, RBOH F | respiratory burst oxidase protein F | chr1:23770266-23776317 FORWARD LENGTH=944
NR ref|XP_002441420.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 927 19 924 0.0 103.2 90.3 92.8
Subject 957 18 922
Annot hypothetical protein SORBIDRAFT_09g026320 [Sorghum bicolor] gi|241946705|gb|EES19850.1| hypothetical protein SORBIDRAFT_09g026320 [Sorghum bicolor]
IRGSP Os05t0528000-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 927 14 924 0.0 102.6 89.4 92.6
Subject 951 14 916
Annot
Sbicolor Sobic.009G206500.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 927 19 924 0.0 103.2 90.1 92.6
Subject 957 18 922
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g03380.1.sm.mkhc length: 927 aa.
IPR000778 Cytochrome b245, heavy chain
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00466 GP91PHOX 4.8e-18 537-560
737-750
760-777
IPR002048 EF-hand domain
Molecular Function GO:0005509 calcium ion binding    
HMMPfam PF13405 EF-hand_6 0.0037 279-303
ProfileScan PS50222 EF_HAND_2 5.085 235-273
274-309
318-353
IPR011992 EF-hand domain pair
Molecular Function GO:0005509 calcium ion binding    
Gene3D G3DSA:1.10.238.10 no description 2.1e-12 208-358
IPR013112 FAD-binding 8
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08022 FAD_binding_8 2.5e-31 634-748
IPR013121 Ferric reductase, NAD binding
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08030 NAD_binding_6 3.1e-42 755-924
IPR013130 Ferric reductase transmembrane component-like domain
HMMPfam PF01794 Ferric_reduct 2.6e-17 437-592
IPR013623 NADPH oxidase Respiratory burst
Molecular Function GO:0004601 peroxidase activity    
Molecular Function GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08414 NADPH_Ox 4.8e-41 178-277
IPR017927 Ferredoxin reductase-type FAD-binding domain
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
ProfileScan PS51384 FAD_FR 15.434 631-751
IPR017938 Riboflavin synthase-like beta-barrel
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
superfamily SSF63380 Riboflavin 1.4e-17 632-750
IPR018247 EF-Hand 1, calcium-binding site
PatternScan PS00018 EF_HAND_1 NA 287-299
no_ID  
Coil coil coiled-coil NA 305-326
774-795
Gene3D G3DSA:2.40.30.10 no description 2.7e-11 636-709
Gene3D G3DSA:3.40.50.80 no description 1.1e-05 818-874
HMMPanther PTHR11972 NADPH 0 26-924
HMMPanther PTHR11972:SF5 RESPIRATORY 0 26-924
Seg seg seg NA 3-13
31-46
69-97
166-181
superfamily SSF47473 EF-hand 2e-20 198-364
superfamily SSF52343 Ferredoxin 4.1e-07 738-780
Pseudomolecule
Chromosome Start End Strand
1793406209348397-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 1330412 1331105 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:1
Zjn_sc00012.1 maker exon 1331195 1331354 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 1331434 1331482 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 1332076 1332189 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 1333603 1334025 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:5
Zjn_sc00012.1 maker exon 1334629 1335012 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:6
Zjn_sc00012.1 maker exon 1335091 1335186 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:7
Zjn_sc00012.1 maker exon 1335262 1335377 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:8
Zjn_sc00012.1 maker exon 1335495 1335662 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:9
Zjn_sc00012.1 maker exon 1335773 1335932 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:10
Zjn_sc00012.1 maker exon 1336043 1336240 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:11
Zjn_sc00012.1 maker exon 1336333 1336461 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:12
Zjn_sc00012.1 maker exon 1336598 1338189 . + . ID=Zjn_sc00012.1.g03380.1.sm.mkhc:exon:13

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