Z. japonica Nagirizaki
Zjn_sc00012.1.g02950.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G26680.2 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 379 1 379 0.0 101.1 83.9 90.5
Subject 383 1 382
Annot | Symbols: | 5'-3' exonuclease family protein | chr5:9311882-9315458 REVERSE LENGTH=383
NR gb|AAV59413.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 379 1 369 0.0 100.3 90.5 94.2
Subject 380 1 369
Annot putative flap endonuclease 1 [Oryza sativa Japonica Group]
IRGSP Os05t0540100-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 379 1 369 0.0 100.3 90.2 93.7
Subject 380 1 369
Annot
Sbicolor Sobic.001G027100.1.p|Chr01|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 379 1 358 e-145 108.4 66 77.8
Subject 411 1 357
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g02950.1.sm.mkhc length: 379 aa.
IPR002421 5'-3' exonuclease, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0008409 5'-3' exonuclease activity    
HMMSmart SM00475 5'-3' 0.00019 29-302
IPR006084 XPG/Rad2 endonuclease
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00853 XPGRADSUPER 6.9e-40 28-42
82-101
149-166
170-190
227-242
HMMPanther PTHR11081 XP-G/RAD2 3.3e-178 1-379
IPR006085 XPG N-terminal
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
HMMPfam PF00752 XPG_N 2.4e-29 1-103
HMMSmart SM00485 Xeroderma 8.7e-51 1-111
IPR006086 XPG-I domain
Molecular Function GO:0004518 nuclease activity    
HMMPfam PF00867 XPG_I 2.9e-30 150-237
HMMSmart SM00484 Xeroderma 1.8e-29 150-222
IPR008918 Helix-hairpin-helix motif, class 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
HMMSmart SM00279 Helix-hairpin-helix 7.3e-15 224-257
IPR019974 XPG conserved site
Molecular Function GO:0016788 hydrolase activity, acting on ester bonds    
PatternScan PS00841 XPG_1 NA 80-94
PatternScan PS00842 XPG_2 NA 153-167
IPR020045 5'-3' exonuclease, C-terminal domain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
superfamily SSF47807 5' 4.8e-39 222-357
IPR023426 Flap structure-specific endonuclease
Molecular Function GO:0016788 hydrolase activity, acting on ester bonds    
HAMAP MF_00614 Fen 143.282 1-345
no_ID  
Gene3D G3DSA:1.10.150.20 no description 7.8e-16 222-288
Gene3D G3DSA:3.40.50.1010 no description 4.6e-70 1-220
HMMPanther PTHR11081:SF9 FLAP 3.3e-178 1-379
Seg seg seg NA 154-169
362-379
superfamily SSF88723 PIN 8.4e-72 2-237
Pseudomolecule
Chromosome Start End Strand
1794922689496359-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 1182450 1182461 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:1
Zjn_sc00012.1 maker exon 1182591 1182707 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 1183238 1183296 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 1183395 1183454 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 1183557 1183619 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:5
Zjn_sc00012.1 maker exon 1183711 1183759 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:6
Zjn_sc00012.1 maker exon 1183854 1183901 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:7
Zjn_sc00012.1 maker exon 1184037 1184102 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:8
Zjn_sc00012.1 maker exon 1184274 1184324 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:9
Zjn_sc00012.1 maker exon 1184407 1184526 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:10
Zjn_sc00012.1 maker exon 1184606 1184690 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:11
Zjn_sc00012.1 maker exon 1184801 1184882 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:12
Zjn_sc00012.1 maker exon 1185088 1185196 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:13
Zjn_sc00012.1 maker exon 1185272 1185319 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:14
Zjn_sc00012.1 maker exon 1185407 1185453 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:15
Zjn_sc00012.1 maker exon 1185529 1185583 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:16
Zjn_sc00012.1 maker exon 1186078 1186541 . + . ID=Zjn_sc00012.1.g02950.1.sm.mkhc:exon:17

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