Z. japonica Nagirizaki
Zjn_sc00012.1.g02790.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G47770.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 202 73 202 2e-47 190.1 47.5 54.5
Subject 384 225 384
Annot | Symbols: FPS1 | farnesyl diphosphate synthase 1 | chr5:19345297-19347415 FORWARD LENGTH=384
NR ref|XP_004961345.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 202 73 202 6e-58 175.2 58.9 60.4
Subject 354 195 354
Annot PREDICTED: farnesyl pyrophosphate synthase [Setaria italica]
IRGSP Os05t0543400-02_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 202 73 202 8e-60 175.7 56.9 61.9
Subject 355 196 355
Annot
Sbicolor Sobic.009G216800.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 202 73 202 6e-60 174.8 58.4 60.4
Subject 353 194 353
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g02790.1.am.mkhc length: 202 aa.
IPR000092 Polyprenyl synthetase
method AccNumber shortName E-value location
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPfam PF00348 polyprenyl_synt 4.9e-19 73-137
PatternScan PS00444 POLYPRENYL_SYNTHASE_2 NA 114-126
IPR008949 Terpenoid synthase
Gene3D G3DSA:1.10.600.10 no description 1.8e-09 1-44
73-136
137-202
superfamily SSF48576 Terpenoid 1.2e-30 73-202
no_ID  
HMMPanther PTHR11525 FARNESYL-PYROPHOSPHATE 2.7e-61 73-202
HMMPanther PTHR11525:SF0 SUBFAMILY 2.7e-61 73-202
Pseudomolecule
Chromosome Start End Strand
1795511399553325-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 1125484 1125508 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:1
Zjn_sc00012.1 maker exon 1125601 1125703 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:2
Zjn_sc00012.1 maker exon 1125808 1125894 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:3
Zjn_sc00012.1 maker exon 1126422 1126569 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:4
Zjn_sc00012.1 maker exon 1126661 1126705 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:5
Zjn_sc00012.1 maker exon 1126987 1127058 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:6
Zjn_sc00012.1 maker exon 1127229 1127670 . + . ID=Zjn_sc00012.1.g02790.1.am.mkhc:exon:7

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