Z. japonica Nagirizaki
Zjn_sc00012.1.g01850.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G22670.4 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 480 6 268 9e-52 70.4 25.8 34
Subject 338 34 329
Annot | Symbols: IAA8 | indoleacetic acid-induced protein 8 | chr2:9636877-9638459 FORWARD LENGTH=338
NR ref|XP_004961249.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 480 5 268 1e-91 56.9 42.1 45.2
Subject 273 2 266
Annot PREDICTED: auxin-responsive protein IAA19-like [Setaria italica]
IRGSP Os05t0559400-03_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 480 5 268 1e-85 58.5 41.5 44.8
Subject 281 2 274
Annot
Sbicolor Sobic.009G229200.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 480 5 268 2e-86 58.1 41.3 45.2
Subject 279 2 272
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g01850.1.sm.mkhc length: 480 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3.2e-59 107-266
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 29.163 156-258
no_ID  
HMMPanther PTHR31734 FAMILY 1.9e-94 4-275
Seg seg seg NA 15-33
67-81
97-118
131-144
201-217
superfamily SSF54277 CAD 3.4e-17 143-256
Pseudomolecule
Chromosome Start End Strand
1799022639905507-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 773302 773722 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:1
Zjn_sc00012.1 maker exon 773923 774158 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 774526 774667 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 774786 774847 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 775496 775502 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:5
Zjn_sc00012.1 maker exon 775652 775697 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:6
Zjn_sc00012.1 maker exon 775947 776546 . + . ID=Zjn_sc00012.1.g01850.1.sm.mkhc:exon:7

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