Z. japonica Nagirizaki
Zjn_sc00012.1.g00950.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G53240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 336 8 334 e-152 101.5 80.7 87.5
Subject 341 12 340
Annot | Symbols: mMDH1 | Lactate/malate dehydrogenase family protein | chr1:19854966-19856802 REVERSE LENGTH=341
NR ref|XP_002441555.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 336 1 336 e-172 101.2 91.7 95.8
Subject 340 1 340
Annot hypothetical protein SORBIDRAFT_09g029240 [Sorghum bicolor] gi|241946840|gb|EES19985.1| hypothetical protein SORBIDRAFT_09g029240 [Sorghum bicolor]
IRGSP Os01t0649100-02_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 336 1 335 e-172 101.2 89.6 95.2
Subject 340 1 340
Annot
Sbicolor Sobic.009G240700.1.p|Chr09|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 336 1 336 e-175 101.2 91.7 95.8
Subject 340 1 340
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g00950.1.sm.mkhc length: 336 aa.
IPR001236 Lactate/malate dehydrogenase, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF00056 Ldh_1_N 2.8e-42 27-162
IPR001252 Malate dehydrogenase, active site
Biological Process GO:0006108 malate metabolic process    
Molecular Function GO:0016615 malate dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00068 MDH NA 167-179
IPR001557 L-lactate/malate dehydrogenase
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0044262 cellular carbohydrate metabolic process    
Biological Process GO:0055114 oxidation-reduction process    
HMMPIR PIRSF000102 L-lactate/malate 9.4e-49 25-335
HMMPanther PTHR11540 MALATE 1.5e-192 1-336
IPR010097 Malate dehydrogenase, type 1
Biological Process GO:0006108 malate metabolic process    
Molecular Function GO:0030060 L-malate dehydrogenase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPanther PTHR11540:SF1 MALATE 1.5e-192 1-336
HMMTigr TIGR01772 MDH_euk_gproteo: 1.7e-116 27-334
IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.90.110.10 no description 1.2e-63 168-334
superfamily SSF56327 LDH 9.9e-46 167-335
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 7.5e-53 27-166
IPR022383 Lactate/malate dehydrogenase, C-terminal
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF02866 Ldh_1_C 3.1e-45 168-332
no_ID  
Seg seg seg NA 311-328
superfamily SSF51735 NAD(P)-binding 5e-40 27-166
Pseudomolecule
Chromosome Start End Strand
171024504710248305-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 430504 430839 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:1
Zjn_sc00012.1 maker exon 430921 431094 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 431635 431707 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 431717 431803 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 431911 431972 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:5
Zjn_sc00012.1 maker exon 432372 432496 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:6
Zjn_sc00012.1 maker exon 432805 432922 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:7
Zjn_sc00012.1 maker exon 433393 433762 . + . ID=Zjn_sc00012.1.g00950.1.sm.mkhc:exon:8

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