Z. japonica Nagirizaki
Zjn_sc00012.1.g00910.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G01420.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 1 548 e-167 111.7 57.1 73.4
Subject 612 1 591
Annot | Symbols: PIN4, ATPIN4 | Auxin efflux carrier family protein | chr2:180478-183199 REVERSE LENGTH=612
NR ref|XP_004961133.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 1 548 0.0 106.9 75.9 85
Subject 586 1 564
Annot PREDICTED: putative auxin efflux carrier component 3b [Setaria italica]
IRGSP Os05t0576900-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 1 547 0.0 107.8 73.7 82.5
Subject 591 1 568
Annot
Sbicolor Sobic.010G051000.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 1 548 0.0 109.5 75.2 83.6
Subject 600 1 578
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g00910.1.am.mk length: 548 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 5.5e-139 9-547
IPR014024 Auxin efflux carrier, plant type
HMMTigr TIGR00946 2a69: 8.2e-124 1-547
no_ID  
HMMPanther PTHR31752 FAMILY 1.7e-231 2-548
HMMPanther PTHR31752:SF0 SUBFAMILY 1.7e-231 2-548
Seg seg seg NA 294-306
331-343
498-508
Pseudomolecule
Chromosome Start End Strand
171027381510275850-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker_non_over exon 402959 404018 . + . ID=Zjn_sc00012.1.g00910.1.am.mk:exon:1
Zjn_sc00012.1 maker_non_over exon 404107 404368 . + . ID=Zjn_sc00012.1.g00910.1.am.mk:exon:2
Zjn_sc00012.1 maker_non_over exon 404467 404552 . + . ID=Zjn_sc00012.1.g00910.1.am.mk:exon:3
Zjn_sc00012.1 maker_non_over exon 404656 404813 . + . ID=Zjn_sc00012.1.g00910.1.am.mk:exon:4
Zjn_sc00012.1 maker_non_over exon 404914 404994 . + . ID=Zjn_sc00012.1.g00910.1.am.mk:exon:5

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