Z. japonica Nagirizaki
Zjn_sc00012.1.g00470.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G63160.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 5 284 e-140 117.3 84.5 93.3
Subject 333 10 333
Annot | Symbols: RFC2 | replication factor C 2 | chr1:23422068-23423771 REVERSE LENGTH=333
NR ref|XP_004976529.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 6 284 e-152 118.3 94.7 97.5
Subject 336 14 336
Annot PREDICTED: replication factor C subunit 4 [Setaria italica]
IRGSP Os04t0569000-01_chr04_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 5 283 e-153 118 93.7 96.8
Subject 335 12 334
Annot
Sbicolor Sobic.006G183100.1.p|Chr06|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 284 6 284 e-153 117.3 93.7 96.5
Subject 333 11 333
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00012.1.g00470.1.sm.mkhc length: 284 aa.
IPR003593 AAA+ ATPase domain
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 2.6e-10 42-163
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 3.2e-10 46-124
IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006260 DNA replication    
superfamily SSF48019 DNA 5.8e-26 187-280
IPR013748 Replication factor C, C-terminal domain
HMMPfam PF08542 Rep_fac_C 3.8e-23 186-273
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9e-42 8-187
no_ID  
Gene3D G3DSA:1.10.8.60 no description 4.6e-20 123-188
Gene3D G3DSA:1.20.272.10 no description 1.1e-32 189-279
Gene3D G3DSA:3.40.50.300 no description 2.9e-34 11-122
HMMPanther PTHR11669 REPLICATION 2e-97 8-279
Seg seg seg NA 21-32
Pseudomolecule
Chromosome Start End Strand
171046129610463475+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00012.1 maker exon 215334 215695 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:7
Zjn_sc00012.1 maker exon 215810 216004 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:6
Zjn_sc00012.1 maker exon 216101 216229 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:5
Zjn_sc00012.1 maker exon 216415 216478 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:4
Zjn_sc00012.1 maker exon 216960 217061 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:3
Zjn_sc00012.1 maker exon 217149 217255 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:2
Zjn_sc00012.1 maker exon 217367 217513 . - . ID=Zjn_sc00012.1.g00470.1.sm.mkhc:exon:1

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