Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00011.1.g08140.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00011.1)

BLAST

TAIR10	AT1G06170.2		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	301	487	4e-37	85.7	16.3	26.3
		Subject	420	221	400
		Annot	\| Symbols: \| basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:1885146-1886564 REVERSE LENGTH=420
NR	ref\|XP_004967599.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	153	490	e-126	72.7	54.7	58.2
		Subject	356	6	356
		Annot	PREDICTED: transcription factor TIP2-like [Setaria italica]
IRGSP	Os01t0293100-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	153	490	e-119	77.3	50.4	56.3
		Subject	379	6	379
		Annot
Sbicolor	Sobic.003G140100.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	490	153	490	e-127	77.3	54.3	57.8
		Subject	379	6	379
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Zjn_sc00011.1.g08140.1.am.mk				length: 490 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0046983	protein dimerization activity
Gene3D	G3DSA:4.10.280.10	no description	8.5e-07	301-354
HMMPfam	PF00010	HLH	1e-05	299-341
HMMSmart	SM00353	helix	4.4e-05	298-347
ProfileScan	PS50888	BHLH	10.429	292-341
superfamily	SSF47459	HLH,	2.7e-09	301-374
no_ID
Coil	coil	coiled-coil	NA	134-155 338-359
HMMPanther	PTHR11514	MYC	7.5e-15	301-490
HMMPanther	PTHR11514:SF8	EGL3	7.5e-15	301-490
Seg	seg	seg	NA	8-29 340-361 368-375

Pseudomolecule

Chromosome	Start	End	Strand
5	6869562	6873805	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00011.1	maker_non_over	exon	4377881	4377952	.	-	.	ID=Zjn_sc00011.1.g08140.1.am.mk:exon:5
Zjn_sc00011.1	maker_non_over	exon	4378099	4378527	.	-	.	ID=Zjn_sc00011.1.g08140.1.am.mk:exon:4
Zjn_sc00011.1	maker_non_over	exon	4378625	4379140	.	-	.	ID=Zjn_sc00011.1.g08140.1.am.mk:exon:3
Zjn_sc00011.1	maker_non_over	exon	4381640	4381868	.	-	.	ID=Zjn_sc00011.1.g08140.1.am.mk:exon:2
Zjn_sc00011.1	maker_non_over	exon	4381898	4382124	.	-	.	ID=Zjn_sc00011.1.g08140.1.am.mk:exon:1