Z. japonica Nagirizaki
Zjn_sc00011.1.g08030.1.am.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G62130.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
71 |
507 |
e-161 |
79.4 |
46.2 |
59.3 |
| Subject |
454 |
18 |
454 |
|
| Annot |
| Symbols: | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr3:23004994-23006358 FORWARD LENGTH=454 |
| NR |
ref|NP_001151142.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
59 |
512 |
0.0 |
82.2 |
69.1 |
73.6 |
| Subject |
470 |
17 |
470 |
|
| Annot |
Zea CEFD homolog1 [Zea mays] gi|195644574|gb|ACG41755.1| isopenicillin N epimerase [Zea mays] gi|414877132|tpg|DAA54263.1| TPA: isopenicillin N epimerase isoform 1 [Zea mays] gi|414877133|tpg|DAA54264.1| TPA: isopenicillin N epimerase isoform 2 [Zea mays] |
| IRGSP |
Os01t0290100-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
77 |
512 |
0.0 |
84.3 |
64.7 |
70.8 |
| Subject |
482 |
45 |
480 |
|
| Annot |
|
| Sbicolor |
Sobic.003G138900.2.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
572 |
73 |
512 |
0.0 |
83.4 |
67.8 |
71 |
| Subject |
477 |
38 |
476 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00011.1.g08030.1.am.mkhc |
length: 572 aa. |
| IPR000192 |
Aminotransferase, class V/Cysteine desulfurase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0008152 |
metabolic process |
|
|
| HMMPfam |
PF00266 |
Aminotran_5 |
5e-19 |
134-487 |
| IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Molecular Function |
GO:0030170 |
pyridoxal phosphate binding |
|
|
| Gene3D |
G3DSA:3.40.640.10 |
no description |
1.6e-43 |
107-371 |
| IPR015424 |
Pyridoxal phosphate-dependent transferase |
| superfamily |
SSF53383 |
PLP-dependent |
5.1e-60 |
79-497 |
| no_ID |
|
| HMMPanther |
PTHR11601 |
CYSTEINE |
5.9e-112 |
69-507 |
| HMMPanther |
PTHR11601:SF13 |
SUBFAMILY |
5.9e-112 |
69-507 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 6788949 | 6793407 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00011.1 |
maker |
exon |
4297268 |
4298145 |
. |
- |
. |
ID=Zjn_sc00011.1.g08030.1.am.mkhc:exon:4 |
| Zjn_sc00011.1 |
maker |
exon |
4298413 |
4298453 |
. |
- |
. |
ID=Zjn_sc00011.1.g08030.1.am.mkhc:exon:3 |
| Zjn_sc00011.1 |
maker |
exon |
4300157 |
4301556 |
. |
- |
. |
ID=Zjn_sc00011.1.g08030.1.am.mkhc:exon:2 |
| Zjn_sc00011.1 |
maker |
exon |
4301600 |
4301726 |
. |
- |
. |
ID=Zjn_sc00011.1.g08030.1.am.mkhc:exon:1 |