Z. japonica Nagirizaki
Zjn_sc00011.1.g07170.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G36890.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 65 194 5e-54 102.8 30.7 37.6
Subject 298 1 125
Annot | Symbols: RAX2, MYB38, ATMYB38, BIT1 | Duplicated homeodomain-like superfamily protein | chr2:15485821-15487245 FORWARD LENGTH=298
NR ref|XP_004968503.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 65 290 2e-81 88.3 55.5 64.1
Subject 256 1 246
Annot PREDICTED: transcription factor RAX2-like [Setaria italica]
IRGSP Os01t0191900-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 65 290 1e-57 91 47.6 55.5
Subject 264 1 251
Annot
Sbicolor Sobic.003G034500.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 290 65 290 2e-81 84.5 56.6 63.4
Subject 245 1 235
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00011.1.g07170.1.sm.mkhc length: 290 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 6.5e-12 78-126
133-175
HMMSmart SM00717 SANT 4.8e-12 77-128
131-179
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 1.2e-22 79-133
134-181
superfamily SSF46689 Homeodomain-like 2.3e-26 78-178
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 14.201 127-181
73-126
no_ID  
HMMPanther PTHR10641 MYB-LIKE 2.9e-81 65-181
HMMPanther PTHR10641:SF203SUBFAMILY NOT 2.9e-81 65-181
Seg seg seg NA 38-49
182-204
232-252
Pseudomolecule
Chromosome Start End Strand
561629136163959-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00011.1 maker exon 3671232 3671646 . - . ID=Zjn_sc00011.1.g07170.1.sm.mkhc:exon:3
Zjn_sc00011.1 maker exon 3671746 3671875 . - . ID=Zjn_sc00011.1.g07170.1.sm.mkhc:exon:2
Zjn_sc00011.1 maker exon 3671951 3672278 . - . ID=Zjn_sc00011.1.g07170.1.sm.mkhc:exon:1

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