Z. japonica Nagirizaki
Zjn_sc00011.1.g07020.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT3G16500.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 242 58 225 2e-47 111.2 40.9 50.4
Subject 269 95 253
Annot | Symbols: PAP1, IAA26 | phytochrome-associated protein 1 | chr3:5612801-5614208 REVERSE LENGTH=269
NR ref|XP_002457201.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 242 1 240 2e-72 96.7 68.6 75.6
Subject 234 1 232
Annot hypothetical protein SORBIDRAFT_03g003200 [Sorghum bicolor] gi|241929176|gb|EES02321.1| hypothetical protein SORBIDRAFT_03g003200 [Sorghum bicolor]
IRGSP Os02t0228900-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 242 13 240 2e-49 124 48.3 59.9
Subject 300 78 298
Annot
Sbicolor Sobic.003G035700.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 242 1 240 2e-75 139.7 68.6 75.6
Subject 338 105 336
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00011.1.g07020.1.sm.mkhc length: 242 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 3e-44 53-226
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 30.625 115-223
no_ID  
HMMPanther PTHR31211 FAMILY 4.9e-74 9-241
HMMPanther PTHR31211:SF0 SUBFAMILY 4.9e-74 9-241
Seg seg seg NA 58-74
96-106
231-242
superfamily SSF54277 CAD 1.2e-15 102-221
Pseudomolecule
Chromosome Start End Strand
560457906048474+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00011.1 maker exon 3554109 3554243 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:1
Zjn_sc00011.1 maker exon 3554265 3554543 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:2
Zjn_sc00011.1 maker exon 3554660 3554741 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:3
Zjn_sc00011.1 maker exon 3554859 3555145 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:4
Zjn_sc00011.1 maker exon 3555254 3555413 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:5
Zjn_sc00011.1 maker exon 3555524 3555587 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:6
Zjn_sc00011.1 maker exon 3555677 3556793 . + . ID=Zjn_sc00011.1.g07020.1.sm.mkhc:exon:7

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