Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00011.1.g06440.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00011.1)

BLAST

TAIR10	AT1G22770.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1190	15	1188	0.0	98.6	66.1	77.7
		Subject	1173	4	1169
		Annot	\| Symbols: GI, FB \| gigantea protein (GI) \| chr1:8062398-8067447 FORWARD LENGTH=1173
NR	ref\|NP_001042220.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1190	14	1190	0.0	97.5	88.2	92.3
		Subject	1160	1	1160
		Annot	Os01g0182600 [Oryza sativa Japonica Group] gi\|67476983\|sp\|Q9AWL7.2\|GIGAN_ORYSJ RecName: Full=Protein GIGANTEA gi\|55296272\|dbj\|BAD68052.1\| putative gigantea [Oryza sativa Japonica Group] gi\|113531751\|dbj\|BAF04134.1\| Os01g0182600 [Oryza sativa Japonica Group]
IRGSP	Os01t0182600-03_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1190	14	1190	0.0	97.5	88.2	92.3
		Subject	1160	1	1160
		Annot
Sbicolor	Sobic.003G040900.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	1190	14	1190	0.0	97.6	88	92
		Subject	1162	1	1162
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR026211	GIGANTEA
Zjn_sc00011.1.g06440.1.sm.mkhc				length: 1190 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:2000028	regulation of photoperiodism, flowering
FPrintScan	PR02081	GIGANTEA	1.3e-175	17-35 137-161 198-218 218-236 248-266 266-287 293-311 317-337 342-361 361-381 393-415 465-488 525-546
no_ID
Seg	seg	seg	NA	180-191 286-306 398-407

Pseudomolecule

Chromosome	Start	End	Strand
5	5646900	5654579	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00011.1	maker	exon	3155219	3155538	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:15
Zjn_sc00011.1	maker	exon	3155646	3155700	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:14
Zjn_sc00011.1	maker	exon	3155814	3156032	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:13
Zjn_sc00011.1	maker	exon	3156187	3156255	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:12
Zjn_sc00011.1	maker	exon	3156365	3157936	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:11
Zjn_sc00011.1	maker	exon	3158616	3158825	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:10
Zjn_sc00011.1	maker	exon	3158992	3159142	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:9
Zjn_sc00011.1	maker	exon	3159215	3159455	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:8
Zjn_sc00011.1	maker	exon	3160195	3160253	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:7
Zjn_sc00011.1	maker	exon	3160669	3160943	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:6
Zjn_sc00011.1	maker	exon	3161093	3161235	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:5
Zjn_sc00011.1	maker	exon	3161321	3161375	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:4
Zjn_sc00011.1	maker	exon	3161478	3161555	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:3
Zjn_sc00011.1	maker	exon	3161657	3161761	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:2
Zjn_sc00011.1	maker	exon	3162878	3162898	.	-	.	ID=Zjn_sc00011.1.g06440.1.sm.mkhc:exon:1