Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00011.1.g04950.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00011.1)

BLAST

TAIR10	AT5G54960.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	368	29	250	1e-94	164.9	45.9	52.2
		Subject	607	44	266
		Annot	\| Symbols: PDC2 \| pyruvate decarboxylase-2 \| chr5:22310858-22312681 REVERSE LENGTH=607
NR	gb\|EAY72634.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	368	1	250	e-112	162.2	59.5	62.8
		Subject	597	1	256
		Annot	hypothetical protein OsI_00500 [Oryza sativa Indica Group]
IRGSP	Os01t0160100-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	368	1	250	e-115	162.2	59.2	63
		Subject	597	1	256
		Annot
Sbicolor	Sobic.003G061300.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	368	1	251	e-112	160.6	59	62
		Subject	591	1	251
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011766	Thiamine pyrophosphate enzyme, C-terminal TPP-binding
Zjn_sc00011.1.g04950.1.sm.mkhc				length: 368 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF02775	TPP_enzyme_C	1.7e-05	249-339
IPR012001	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain
Molecular Function	GO:0030976	thiamine pyrophosphate binding
HMMPfam	PF02776	TPP_enzyme_N	3.9e-24	31-196
IPR012110	Thiamine pyrophosphate (TPP)-dependent enzyme
HMMPanther	PTHR18968:SF4	PYRUVATE	1.1e-84	19-259
no_ID
Gene3D	G3DSA:3.40.50.970	no description	7.5e-26	30-209 244-354
HMMPanther	PTHR18968	THIAMINE	1.1e-84	19-259
Seg	seg	seg	NA	10-30 85-97 224-232 316-327
superfamily	SSF52518	Thiamin	1.8e-22	29-213 167-368

Pseudomolecule

Chromosome	Start	End	Strand
5	4845092	4847866	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00011.1	maker	exon	2353411	2353625	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:6
Zjn_sc00011.1	maker	exon	2353708	2353896	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:5
Zjn_sc00011.1	maker	exon	2354930	2355029	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:4
Zjn_sc00011.1	maker	exon	2355133	2355296	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:3
Zjn_sc00011.1	maker	exon	2355690	2355945	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:2
Zjn_sc00011.1	maker	exon	2355959	2356185	.	-	.	ID=Zjn_sc00011.1.g04950.1.sm.mkhc:exon:1