Z. japonica Nagirizaki
Zjn_sc00011.1.g04880.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G51840.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
156 |
83 |
156 |
1e-29 |
279.5 |
38.5 |
42.3 |
| Subject |
436 |
365 |
436 |
|
| Annot |
| Symbols: ACX4, ATSCX, ATG6 | acyl-CoA oxidase 4 | chr3:19225653-19229008 REVERSE LENGTH=436 |
| NR |
ref|XP_004968274.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
156 |
83 |
156 |
3e-33 |
279.5 |
44.9 |
46.2 |
| Subject |
436 |
363 |
436 |
|
| Annot |
PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal-like [Setaria italica] |
| IRGSP |
Os01t0159400-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
156 |
83 |
156 |
6e-36 |
277.6 |
44.9 |
45.5 |
| Subject |
433 |
360 |
433 |
|
| Annot |
|
| Sbicolor |
Sobic.003G061800.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
156 |
83 |
156 |
1e-35 |
280.1 |
46.2 |
46.8 |
| Subject |
437 |
363 |
437 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00011.1.g04880.1.sm.mkhc |
length: 156 aa. |
| IPR006089 |
Acyl-CoA dehydrogenase, conserved site |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003995 |
acyl-CoA dehydrogenase activity |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| PatternScan |
PS00073 |
ACYL_COA_DH_2 |
NA |
99-118 |
| IPR006091 |
Acyl-CoA oxidase/dehydrogenase, central domain |
| Molecular Function |
GO:0003995 |
acyl-CoA dehydrogenase activity |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF02770 |
Acyl-CoA_dh_M |
0.00022 |
64-83 |
| IPR009075 |
Acyl-CoA dehydrogenase/oxidase C-terminal |
| Molecular Function |
GO:0016627 |
oxidoreductase activity, acting on the CH-CH group of donors |
|
|
| Biological Process |
GO:0055114 |
oxidation-reduction process |
|
|
| HMMPfam |
PF00441 |
Acyl-CoA_dh_1 |
1.5e-05 |
66-138 |
| superfamily |
SSF47203 |
Acyl-CoA |
6.8e-11 |
76-142 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.140.10 |
no description |
6.9e-11 |
64-142 |
| HMMPanther |
PTHR10909 |
ELECTRON |
1.9e-36 |
83-143 |
| HMMPanther |
PTHR10909:SF122PREDICTED: |
HYPOTHETICAL |
1.9e-36 |
83-143 |
| Seg |
seg |
seg |
NA |
5-17 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 4803217 | 4808324 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00011.1 |
maker |
exon |
2311536 |
2312226 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:6 |
| Zjn_sc00011.1 |
maker |
exon |
2312326 |
2312418 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:5 |
| Zjn_sc00011.1 |
maker |
exon |
2313970 |
2314029 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:4 |
| Zjn_sc00011.1 |
maker |
exon |
2314813 |
2314874 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:3 |
| Zjn_sc00011.1 |
maker |
exon |
2316414 |
2316524 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:2 |
| Zjn_sc00011.1 |
maker |
exon |
2316628 |
2316643 |
. |
- |
. |
ID=Zjn_sc00011.1.g04880.1.sm.mkhc:exon:1 |