Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00011.1.g03140.1.am.mk

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00011.1)

BLAST

TAIR10	AT4G32810.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	569	92	565	0.0	100.2	55.9	70.5
		Subject	570	80	570
		Annot	\| Symbols: CCD8, MAX4, ATCCD8 \| carotenoid cleavage dioxygenase 8 \| chr4:15828348-15831299 FORWARD LENGTH=570
NR	ref\|NP_001183929.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	569	1	569	0.0	100.5	88.2	93.5
		Subject	572	1	572
		Annot	carotenoid cleavage dioxygenase [Zea mays] gi\|237908819\|gb\|ACR33785.1\| carotenoid cleavage dioxygenase [Zea mays] gi\|414880487\|tpg\|DAA57618.1\| TPA: carotenoid cleavage dioxygenase [Zea mays]
IRGSP	Os01t0746400-00_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	569	1	567	0.0	100	85.6	91
		Subject	569	1	569
		Annot
Sbicolor	Sobic.003G293600.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	569	1	569	0.0	101.8	88.2	93.8
		Subject	579	1	579
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR004294	Carotenoid oxygenase
Zjn_sc00011.1.g03140.1.am.mk				length: 569 aa.
method	AccNumber	shortName	E-value	location
HMMPanther	PTHR10543	BETA-CAROTENE	9e-249	26-565
HMMPfam	PF03055	RPE65	1.2e-109	94-563
no_ID
HMMPanther	PTHR10543:SF6	BETA-CAROTENE	9e-249	26-565
Seg	seg	seg	NA	14-33 62-90

Pseudomolecule

Chromosome	Start	End	Strand
5	14788753	14791963	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00011.1	maker_non_over	exon	1523982	1524139	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:6
Zjn_sc00011.1	maker_non_over	exon	1524234	1524526	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:5
Zjn_sc00011.1	maker_non_over	exon	1524666	1524859	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:4
Zjn_sc00011.1	maker_non_over	exon	1524951	1525463	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:3
Zjn_sc00011.1	maker_non_over	exon	1525494	1525694	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:2
Zjn_sc00011.1	maker_non_over	exon	1526842	1527192	.	-	.	ID=Zjn_sc00011.1.g03140.1.am.mk:exon:1