Z. japonica Nagirizaki
Zjn_sc00011.1.g02590.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G64060.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 929 23 849 0.0 101.6 62.1 72.1
Subject 944 25 882
Annot | Symbols: ATRBOH F, ATRBOHF, RBOHAP108, RBOHF, RBOH F | respiratory burst oxidase protein F | chr1:23770266-23776317 FORWARD LENGTH=944
NR ref|XP_002456307.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 929 1 855 0.0 96.3 83.6 86
Subject 895 1 888
Annot hypothetical protein SORBIDRAFT_03g033800 [Sorghum bicolor] gi|241928282|gb|EES01427.1| hypothetical protein SORBIDRAFT_03g033800 [Sorghum bicolor]
IRGSP Os05t0528000-01_chr05_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 929 20 849 0.0 102.4 77.8 82.3
Subject 951 19 889
Annot
Sbicolor Sobic.003G287400.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 929 1 849 0.0 101.6 83.4 85.8
Subject 944 1 882
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00011.1.g02590.1.sm.mkhc length: 929 aa.
IPR000778 Cytochrome b245, heavy chain
method AccNumber shortName E-value location
Cellular Component GO:0016020 membrane    
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00466 GP91PHOX 4e-18 524-547
724-737
747-764
IPR002048 EF-hand domain
Molecular Function GO:0005509 calcium ion binding    
ProfileScan PS50222 EF_HAND_2 5.085 244-260
261-296
305-340
IPR011992 EF-hand domain pair
Molecular Function GO:0005509 calcium ion binding    
Gene3D G3DSA:1.10.238.10 no description 3.6e-10 206-334
IPR013112 FAD-binding 8
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08022 FAD_binding_8 3.9e-31 621-735
IPR013121 Ferric reductase, NAD binding
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08030 NAD_binding_6 1e-17 742-852
IPR013130 Ferric reductase transmembrane component-like domain
HMMPfam PF01794 Ferric_reduct 3.8e-17 424-579
IPR013623 NADPH oxidase Respiratory burst
Molecular Function GO:0004601 peroxidase activity    
Molecular Function GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor    
Biological Process GO:0055114 oxidation-reduction process    
HMMPfam PF08414 NADPH_Ox 5.3e-39 166-264
IPR017927 Ferredoxin reductase-type FAD-binding domain
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
ProfileScan PS51384 FAD_FR 15.434 618-738
IPR017938 Riboflavin synthase-like beta-barrel
Molecular Function GO:0016491 oxidoreductase activity    
Biological Process GO:0055114 oxidation-reduction process    
superfamily SSF63380 Riboflavin 1.6e-17 619-737
IPR018247 EF-Hand 1, calcium-binding site
PatternScan PS00018 EF_HAND_1 NA 274-286
no_ID  
Coil coil coiled-coil NA 292-313
761-782
Gene3D G3DSA:2.40.30.10 no description 1.6e-11 623-696
HMMPanther PTHR11972 NADPH 0 30-849
HMMPanther PTHR11972:SF5 RESPIRATORY 0 30-849
Seg seg seg NA 7-13
26-44
84-103
154-171
superfamily SSF47473 EF-hand 1.7e-20 167-347
superfamily SSF52343 Ferredoxin 5.7e-07 724-767
Pseudomolecule
Chromosome Start End Strand
51450321514510953+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00011.1 maker exon 1238444 1239098 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:1
Zjn_sc00011.1 maker exon 1239177 1239336 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:2
Zjn_sc00011.1 maker exon 1239458 1239506 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:3
Zjn_sc00011.1 maker exon 1240335 1240448 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:4
Zjn_sc00011.1 maker exon 1241640 1242062 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:5
Zjn_sc00011.1 maker exon 1242220 1242603 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:6
Zjn_sc00011.1 maker exon 1242691 1242786 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:7
Zjn_sc00011.1 maker exon 1242865 1242980 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:8
Zjn_sc00011.1 maker exon 1243109 1243276 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:9
Zjn_sc00011.1 maker exon 1243367 1243526 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:10
Zjn_sc00011.1 maker exon 1243668 1243760 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:11
Zjn_sc00011.1 maker exon 1244024 1244152 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:12
Zjn_sc00011.1 maker exon 1245940 1246182 . + . ID=Zjn_sc00011.1.g02590.1.sm.mkhc:exon:13

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