Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00011.1.g01700.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00011.1)

BLAST

TAIR10	AT1G74320.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	362	19	350	e-133	96.7	58.8	74
		Subject	350	16	340
		Annot	\| Symbols: \| Protein kinase superfamily protein \| chr1:27941192-27942903 FORWARD LENGTH=350
NR	ref\|XP_004969755.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	362	1	350	0.0	101.7	88.4	94.5
		Subject	368	1	362
		Annot	PREDICTED: probable choline kinase 2 isoform X2 [Setaria italica]
IRGSP	Os01t0717000-01_chr01_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	362	1	351	e-177	101.7	83.4	90.9
		Subject	368	1	363
		Annot
Sbicolor	Sobic.003G277700.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	362	17	350	e-177	101.9	84.3	89
		Subject	369	26	363
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR011009	Protein kinase-like domain
Zjn_sc00011.1.g01700.1.sm.mkhc				length: 362 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups
superfamily	SSF56112	Protein	3.7e-101	1-357
IPR026712	Choline/Ethanolamine kinase
Molecular Function	GO:0016301	kinase activity
Biological Process	GO:0046474	glycerophospholipid biosynthetic process
HMMPanther	PTHR22603	CHOLINE/ETHANOALAMINE	1.5e-130	18-352
no_ID
Coil	coil	coiled-coil	NA	184-205
Gene3D	G3DSA:3.10.450.110	no description	1.1e-15	20-115
Gene3D	G3DSA:3.90.1200.10	no description	1.5e-87	116-354
HMMPfam	PF01633	Choline_kinase	2.8e-70	78-278
Seg	seg	seg	NA	32-43 69-84

Pseudomolecule

Chromosome	Start	End	Strand
5	14146388	14149922	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00011.1	maker	exon	881617	881652	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:8
Zjn_sc00011.1	maker	exon	881997	882074	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:7
Zjn_sc00011.1	maker	exon	882153	882253	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:6
Zjn_sc00011.1	maker	exon	882702	882749	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:5
Zjn_sc00011.1	maker	exon	882871	882988	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:4
Zjn_sc00011.1	maker	exon	883378	883573	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:3
Zjn_sc00011.1	maker	exon	883666	883787	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:2
Zjn_sc00011.1	maker	exon	884762	885151	.	-	.	ID=Zjn_sc00011.1.g01700.1.sm.mkhc:exon:1