Z. japonica Nagirizaki
Zjn_sc00010.1.g04340.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G67090.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 53 218 1e-63 81.1 49.1 62.2
Subject 180 1 175
Annot | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180
NR ref|XP_006663954.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 53 222 4e-80 76.6 63.5 69.4
Subject 170 1 170
Annot PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic-like [Oryza brachyantha]
IRGSP Os12t0291400-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 53 220 2e-81 78.8 63.1 67.6
Subject 175 1 168
Annot
Sbicolor Sobic.005G042000.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 53 221 5e-78 76.1 57.7 69.4
Subject 169 1 168
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00010.1.g04340.1.am.mk length: 222 aa.
IPR000894 Ribulose bisphosphate carboxylase small chain, domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.30.190.10 no description 2.4e-59 100-220
HMMPfam PF00101 RuBisCO_small 3.9e-40 110-219
HMMSmart SM00961 Ribulose 2.2e-39 110-218
superfamily SSF55239 RuBisCO, 4.1e-54 100-221
IPR024680 Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal
HMMPfam PF12338 RbcS 1.4e-08 59-84
IPR024681 Ribulose bisphosphate carboxylase, small chain
FPrintScan PR00152 RUBISCOSMALL 1.7e-65 61-78
88-106
109-135
137-152
158-187
192-218
no_ID  
HMMPanther PTHR31262 FAMILY 6e-102 46-221
HMMPanther PTHR31262:SF0 SUBFAMILY 6e-102 46-221
Seg seg seg NA 79-87
Pseudomolecule
Chromosome Start End Strand
1640111854012044-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00010.1 maker_non_over exon 4011185 4011550 . - . ID=Zjn_sc00010.1.g04340.1.am.mk:exon:3
Zjn_sc00010.1 maker_non_over exon 4011630 4011782 . - . ID=Zjn_sc00010.1.g04340.1.am.mk:exon:2
Zjn_sc00010.1 maker_non_over exon 4011895 4012044 . - . ID=Zjn_sc00010.1.g04340.1.am.mk:exon:1

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