Z. japonica Nagirizaki
Zjn_sc00010.1.g04320.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G67090.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 107 228 2e-52 77.6 37.1 45.7
Subject 180 53 175
Annot | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180
NR ref|XP_006663954.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 101 232 2e-59 73.3 47 50.9
Subject 170 38 170
Annot PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic-like [Oryza brachyantha]
IRGSP Os12t0291100-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 101 230 5e-61 75.4 46.6 49.6
Subject 175 38 168
Annot
Sbicolor Sobic.005G042000.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 232 107 231 6e-59 72.8 40.9 49.6
Subject 169 44 168
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00010.1.g04320.1.am.mk length: 232 aa.
IPR000894 Ribulose bisphosphate carboxylase small chain, domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.30.190.10 no description 1.7e-59 48-106
110-230
HMMPfam PF00101 RuBisCO_small 2.7e-40 58-93
120-228
HMMSmart SM00961 Ribulose 4.4e-41 120-228
superfamily SSF55239 RuBisCO, 1.9e-17 110-231
48-107
IPR024680 Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal
HMMPfam PF12338 RbcS 2.5e-07 7-32
IPR024681 Ribulose bisphosphate carboxylase, small chain
FPrintScan PR00152 RUBISCOSMALL 7.3e-33 9-26
36-54
57-83
85-100
no_ID  
HMMPanther PTHR31262 FAMILY 9.8e-82 1-231
HMMPanther PTHR31262:SF0 SUBFAMILY 9.8e-82 1-231
Pseudomolecule
Chromosome Start End Strand
1639817253982803+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00010.1 maker_non_over exon 3981725 3982041 . + . ID=Zjn_sc00010.1.g04320.1.am.mk:exon:1
Zjn_sc00010.1 maker_non_over exon 3982422 3982803 . + . ID=Zjn_sc00010.1.g04320.1.am.mk:exon:2

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