Z. japonica Nagirizaki
Zjn_sc00010.1.g04290.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G67090.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 170 4 166 2e-63 105.9 64.1 78.8
Subject 180 10 175
Annot | Symbols: RBCS1A | ribulose bisphosphate carboxylase small chain 1A | chr1:25048465-25049249 REVERSE LENGTH=180
NR dbj|BAK23964.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 170 1 170 2e-80 100 82.9 89.4
Subject 170 1 170
Annot ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [synthetic construct]
IRGSP Os12t0291100-01_chr12_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 170 1 168 9e-83 102.9 82.9 88.8
Subject 175 1 168
Annot
Sbicolor Sobic.005G042000.1.p|Chr05|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 170 1 170 5e-77 99.4 74.7 88.8
Subject 169 1 169
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00010.1.g04290.1.sm.mkhc length: 170 aa.
IPR000894 Ribulose bisphosphate carboxylase small chain, domain
method AccNumber shortName E-value location
Gene3D G3DSA:3.30.190.10 no description 5.4e-60 48-168
HMMPfam PF00101 RuBisCO_small 1.9e-40 58-167
HMMSmart SM00961 Ribulose 2.2e-39 58-166
superfamily SSF55239 RuBisCO, 2.3e-54 48-169
IPR024680 Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal
HMMPfam PF12338 RbcS 2.8e-09 7-32
IPR024681 Ribulose bisphosphate carboxylase, small chain
FPrintScan PR00152 RUBISCOSMALL 1.5e-66 9-26
36-54
57-83
85-100
106-135
140-166
no_ID  
HMMPanther PTHR31262 FAMILY 1.3e-101 1-169
HMMPanther PTHR31262:SF0 SUBFAMILY 1.3e-101 1-169
Pseudomolecule
Chromosome Start End Strand
1639642153965217+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00010.1 maker exon 3964215 3964425 . + . ID=Zjn_sc00010.1.g04290.1.sm.mkhc:exon:1
Zjn_sc00010.1 maker exon 3964545 3965217 . + . ID=Zjn_sc00010.1.g04290.1.sm.mkhc:exon:2

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