Z. japonica Nagirizaki
Zjn_sc00010.1.g01030.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G43190.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
812 |
4 |
808 |
0.0 |
99.5 |
74 |
85.6 |
| Subject |
808 |
2 |
805 |
|
| Annot |
| Symbols: SUS4, ATSUS4 | sucrose synthase 4 | chr3:15179204-15182577 REVERSE LENGTH=808 |
| NR |
ref|XP_004984086.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
812 |
1 |
810 |
0.0 |
100.5 |
97.4 |
99 |
| Subject |
816 |
1 |
810 |
|
| Annot |
PREDICTED: sucrose synthase 2 [Setaria italica] gi|685509846|gb|AIO11844.1| sucrose synthase [Panicum virgatum] |
| IRGSP |
Os03t0401300-01_chr03_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
812 |
1 |
810 |
0.0 |
100.5 |
95.4 |
97.5 |
| Subject |
816 |
1 |
810 |
|
| Annot |
|
| Sbicolor |
Sobic.001G344500.1.p|Chr01|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
812 |
1 |
810 |
0.0 |
100.5 |
96.8 |
98.6 |
| Subject |
816 |
1 |
810 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00010.1.g01030.1.sm.mkhc |
length: 812 aa. |
| IPR000368 |
Sucrose synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0005985 |
sucrose metabolic process |
|
|
| HMMPfam |
PF00862 |
Sucrose_synth |
0 |
12-559 |
| IPR001296 |
Glycosyl transferase, family 1 |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF00534 |
Glycos_transf_1 |
8.8e-37 |
563-745 |
| IPR012820 |
Sucrose synthase, plant/cyanobacteria |
| Biological Process |
GO:0005985 |
sucrose metabolic process |
|
|
| Molecular Function |
GO:0016157 |
sucrose synthase activity |
|
|
| HMMPanther |
PTHR12526:SF27 |
SUCROSE |
0 |
137-802 |
| HMMTigr |
TIGR02470 |
sucr_synth: |
0 |
29-807 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2000 |
no description |
3.1e-16 |
565-750 |
| HMMPanther |
PTHR12526 |
GLYCOSYLTRANSFERASE |
0 |
137-802 |
| Seg |
seg |
seg |
NA |
258-271 |
| superfamily |
SSF53756 |
UDP-Glycosyltransferase/glycogen |
1.6e-49 |
292-768 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 1 | 10079535 | 10085652 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00010.1 |
maker |
exon |
838287 |
839333 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:13 |
| Zjn_sc00010.1 |
maker |
exon |
839430 |
839654 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:12 |
| Zjn_sc00010.1 |
maker |
exon |
839749 |
839915 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:11 |
| Zjn_sc00010.1 |
maker |
exon |
839994 |
840110 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:10 |
| Zjn_sc00010.1 |
maker |
exon |
840194 |
840367 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:9 |
| Zjn_sc00010.1 |
maker |
exon |
840455 |
840550 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:8 |
| Zjn_sc00010.1 |
maker |
exon |
840641 |
840857 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:7 |
| Zjn_sc00010.1 |
maker |
exon |
840950 |
841068 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:6 |
| Zjn_sc00010.1 |
maker |
exon |
841225 |
841417 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:5 |
| Zjn_sc00010.1 |
maker |
exon |
841525 |
841676 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:4 |
| Zjn_sc00010.1 |
maker |
exon |
841763 |
841892 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:3 |
| Zjn_sc00010.1 |
maker |
exon |
842629 |
842765 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:2 |
| Zjn_sc00010.1 |
maker |
exon |
844123 |
844404 |
. |
- |
. |
ID=Zjn_sc00010.1.g01030.1.sm.mkhc:exon:1 |