Z. japonica Nagirizaki
Zjn_sc00009.1.g11740.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G33860.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 1 89 1e-17 273.9 22.5 26.1
Subject 608 327 420
Annot | Symbols: ETT, ARF3 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr2:14325444-14328613 REVERSE LENGTH=608
NR ref|XP_012701823.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 2 168 9e-36 308.6 40.1 50
Subject 685 297 453
Annot PREDICTED: auxin response factor 3-like isoform X1 [Setaria italica]
IRGSP Os01t0753500-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 1 91 4e-35 329.3 30.2 33.3
Subject 731 359 453
Annot
Sbicolor Sobic.003G298600.4.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 222 91 222 2e-38 308.6 41 46.8
Subject 685 555 685
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g11740.1.am.mkhc length: 222 aa.
IPR010525 Auxin response factor
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 2.5e-10 1-39
no_ID  
HMMPanther PTHR31384 FAMILY 6.2e-20 1-74
Seg seg seg NA 210-220
Pseudomolecule
Chromosome Start End Strand
51500420815008385-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker exon 4962569 4962849 . + . ID=Zjn_sc00009.1.g11740.1.am.mkhc:exon:1
Zjn_sc00009.1 maker exon 4964629 4964745 . + . ID=Zjn_sc00009.1.g11740.1.am.mkhc:exon:2
Zjn_sc00009.1 maker exon 4964821 4964896 . + . ID=Zjn_sc00009.1.g11740.1.am.mkhc:exon:3
Zjn_sc00009.1 maker exon 4965624 4965774 . + . ID=Zjn_sc00009.1.g11740.1.am.mkhc:exon:4
Zjn_sc00009.1 maker exon 4966349 4966746 . + . ID=Zjn_sc00009.1.g11740.1.am.mkhc:exon:5

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