Z. japonica Nagirizaki
Zjn_sc00009.1.g10940.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT1G69370.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
248 |
62 |
248 |
1e-75 |
127.4 |
52.4 |
61.3 |
| Subject |
316 |
130 |
316 |
|
| Annot |
| Symbols: CM3, cm-3 | chorismate mutase 3 | chr1:26080098-26081559 FORWARD LENGTH=316 |
| NR |
gb|ACN37057.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
248 |
1 |
248 |
e-101 |
97.2 |
75.8 |
83.9 |
| Subject |
241 |
1 |
241 |
|
| Annot |
unknown [Zea mays] gi|413952339|gb|AFW84988.1| hypothetical protein ZEAMMB73_157098 [Zea mays] |
| IRGSP |
Os01t0764400-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
248 |
61 |
248 |
6e-94 |
126.2 |
69.4 |
72.6 |
| Subject |
313 |
126 |
313 |
|
| Annot |
|
| Sbicolor |
Sobic.003G306100.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
248 |
62 |
248 |
3e-96 |
141.1 |
65.3 |
70.2 |
| Subject |
350 |
164 |
350 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00009.1.g10940.1.sm.mkhc |
length: 248 aa. |
| IPR008238 |
Chorismate mutase, AroQ class, eukaryotic type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004106 |
chorismate mutase activity |
|
|
| Biological Process |
GO:0009073 |
aromatic amino acid family biosynthetic process |
|
|
| Gene3D |
G3DSA:1.10.590.10 |
no description |
4.4e-86 |
61-248 |
| HMMPanther |
PTHR21145 |
CHORISMATE |
9.7e-103 |
62-248 |
| HMMTigr |
TIGR01802 |
CM_pl-yst: |
1.3e-73 |
61-248 |
| ProfileScan |
PS51169 |
CHORISMATE_MUT_3 |
65.443 |
1-248 |
| IPR020822 |
Chorismate mutase, type II |
| Biological Process |
GO:0046417 |
chorismate metabolic process |
|
|
| superfamily |
SSF48600 |
Chorismate |
1.8e-75 |
62-248 |
| no_ID |
|
| HMMPanther |
PTHR21145:SF0 |
SUBFAMILY |
9.7e-103 |
62-248 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 15297633 | 15302689 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00009.1 |
maker |
exon |
4668265 |
4668597 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:1 |
| Zjn_sc00009.1 |
maker |
exon |
4669443 |
4669452 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:2 |
| Zjn_sc00009.1 |
maker |
exon |
4669731 |
4669817 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:3 |
| Zjn_sc00009.1 |
maker |
exon |
4670593 |
4670736 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:4 |
| Zjn_sc00009.1 |
maker |
exon |
4671049 |
4671141 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:5 |
| Zjn_sc00009.1 |
maker |
exon |
4671269 |
4673321 |
. |
+ |
. |
ID=Zjn_sc00009.1.g10940.1.sm.mkhc:exon:6 |