Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00009.1.g10740.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00009.1)

BLAST

TAIR10	AT4G07960.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	663	3	663	0.0	105.4	71.3	80.8
		Subject	699	6	699
		Annot	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699
NR	ref\|XP_008657194.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	663	1	663	0.0	103.8	91	93.8
		Subject	688	1	688
		Annot	PREDICTED: probable xyloglucan glycosyltransferase 1 [Zea mays] gi\|413952308\|gb\|AFW84957.1\| hypothetical protein ZEAMMB73_960799 [Zea mays]
IRGSP	Os05t0510800-01_chr05_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	663	20	663	0.0	103.8	83.1	89.9
		Subject	688	25	688
		Annot
Sbicolor	Sobic.003G308100.1.p\|Chr03\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	663	1	663	0.0	103.9	91.3	93.8
		Subject	689	1	689
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

no_ID
Zjn_sc00009.1.g10740.1.sm.mkhc				length: 663 aa.
method	AccNumber	shortName	E-value	location
Gene3D	G3DSA:3.90.550.10	no description	7.5e-13	220-456
HMMPanther	PTHR32044	FAMILY	0	62-663
HMMPanther	PTHR32044:SF0	SUBFAMILY	0	62-663
HMMPfam	PF13641	Glyco_tranf_2_3	4.2e-28	221-437
Seg	seg	seg	NA	2-14 32-48 61-87 258-267 363-376 459-479 618-634
superfamily	SSF53448	Nucleotide-diphospho-sugar	3.6e-39	217-508

Pseudomolecule

Chromosome	Start	End	Strand
5	15376034	15379739	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00009.1	maker	exon	4591215	4591913	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:1
Zjn_sc00009.1	maker	exon	4592694	4592915	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:2
Zjn_sc00009.1	maker	exon	4592961	4593002	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:3
Zjn_sc00009.1	maker	exon	4593091	4593381	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:4
Zjn_sc00009.1	maker	exon	4593472	4593585	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:5
Zjn_sc00009.1	maker	exon	4594052	4594920	.	+	.	ID=Zjn_sc00009.1.g10740.1.sm.mkhc:exon:6