Z. japonica Nagirizaki
Zjn_sc00009.1.g09320.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT5G15100.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
450 |
1 |
400 |
7e-57 |
81.6 |
30.7 |
48.7 |
| Subject |
367 |
1 |
352 |
|
| Annot |
| Symbols: PIN8, ATPIN8 | Auxin efflux carrier family protein | chr5:4892159-4893937 REVERSE LENGTH=367 |
| NR |
ref|NP_001130684.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
450 |
1 |
398 |
e-141 |
96.2 |
62.2 |
68.7 |
| Subject |
433 |
1 |
416 |
|
| Annot |
uncharacterized protein LOC100191787 [Zea mays] gi|194689830|gb|ACF78999.1| unknown [Zea mays] gi|388461349|gb|AFK32347.1| putative auxin efflux carrier PIN9 [Zea mays] gi|414880099|tpg|DAA57230.1| TPA: hypothetical protein ZEAMMB73_851809 [Zea mays] |
| IRGSP |
Os01t0802700-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
450 |
1 |
398 |
e-138 |
94.7 |
60.2 |
68.2 |
| Subject |
426 |
1 |
409 |
|
| Annot |
|
| Sbicolor |
Sobic.003G327500.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
450 |
1 |
398 |
e-139 |
98.7 |
62 |
68.2 |
| Subject |
444 |
1 |
427 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00009.1.g09320.1.sm.mk |
length: 450 aa. |
| IPR004776 |
Auxin efflux carrier |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03547 |
Mem_trans |
1.9e-72 |
10-394 |
| no_ID |
|
| HMMPanther |
PTHR31752 |
FAMILY |
4.9e-122 |
2-394 |
| HMMPanther |
PTHR31752:SF0 |
SUBFAMILY |
4.9e-122 |
2-394 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 15976049 | 15979526 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3991428 |
3991505 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:6 |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3991823 |
3991916 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:5 |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3993407 |
3993483 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:4 |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3993615 |
3993772 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:3 |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3993878 |
3993948 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:2 |
| Zjn_sc00009.1 |
maker_non_over |
exon |
3994031 |
3994905 |
. |
- |
. |
ID=Zjn_sc00009.1.g09320.1.sm.mk:exon:1 |