Z. japonica Nagirizaki
Zjn_sc00009.1.g08870.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G56850.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
309 |
2 |
278 |
2e-55 |
96.1 |
46.9 |
57.9 |
| Subject |
297 |
14 |
271 |
|
| Annot |
| Symbols: AREB3, DPBF3 | ABA-responsive element binding protein 3 | chr3:21046554-21047894 REVERSE LENGTH=297 |
| NR |
ref|XP_004970325.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
309 |
1 |
278 |
e-128 |
107.8 |
76.7 |
82.2 |
| Subject |
333 |
31 |
307 |
|
| Annot |
PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Setaria italica] |
| IRGSP |
Os01t0813100-00_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
309 |
7 |
278 |
e-107 |
112 |
66.3 |
74.4 |
| Subject |
346 |
29 |
314 |
|
| Annot |
|
| Sbicolor |
Sobic.003G332200.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
309 |
1 |
271 |
e-122 |
107.8 |
74.4 |
79.9 |
| Subject |
333 |
31 |
300 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00009.1.g08870.1.sm.mkhc |
length: 309 aa. |
| IPR004827 |
Basic-leucine zipper domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0043565 |
sequence-specific DNA binding |
|
|
| HMMPfam |
PF00170 |
bZIP_1 |
3.8e-12 |
234-276 |
| HMMSmart |
SM00338 |
basic |
3.6e-10 |
230-301 |
| PatternScan |
PS00036 |
BZIP_BASIC |
NA |
237-252 |
| ProfileScan |
PS50217 |
BZIP |
11.611 |
232-277 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
250-285 |
| Gene3D |
G3DSA:1.20.5.170 |
no description |
1.5e-13 |
234-278 |
| HMMPanther |
PTHR22952 |
CAMP-RESPONSE |
4e-118 |
1-287 |
| HMMPanther |
PTHR22952:SF49 |
OS07G0687700 |
4e-118 |
1-287 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 16148621 | 16152067 | -
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00009.1 |
maker |
exon |
3818887 |
3819648 |
. |
+ |
. |
ID=Zjn_sc00009.1.g08870.1.sm.mkhc:exon:1 |
| Zjn_sc00009.1 |
maker |
exon |
3819828 |
3819899 |
. |
+ |
. |
ID=Zjn_sc00009.1.g08870.1.sm.mkhc:exon:2 |
| Zjn_sc00009.1 |
maker |
exon |
3822087 |
3822129 |
. |
+ |
. |
ID=Zjn_sc00009.1.g08870.1.sm.mkhc:exon:3 |
| Zjn_sc00009.1 |
maker |
exon |
3822281 |
3822333 |
. |
+ |
. |
ID=Zjn_sc00009.1.g08870.1.sm.mkhc:exon:4 |