Z. japonica Nagirizaki
Zjn_sc00009.1.g06350.1.sm.mk
Sequence
-
BLAST
| TAIR10 |
AT2G39940.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
1 |
216 |
1e-76 |
266.7 |
61.3 |
75.2 |
| Subject |
592 |
370 |
585 |
|
| Annot |
| Symbols: COI1 | RNI-like superfamily protein | chr2:16672848-16675486 REVERSE LENGTH=592 |
| NR |
ref|NP_001044831.2| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
1 |
222 |
e-112 |
283.8 |
88.3 |
93.7 |
| Subject |
630 |
408 |
630 |
|
| Annot |
Os01g0853400 [Oryza sativa Japonica Group] gi|255673884|dbj|BAF06745.2| Os01g0853400 [Oryza sativa Japonica Group] |
| IRGSP |
Os01t0853400-01_chr01_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
1 |
222 |
e-115 |
268 |
88.3 |
93.7 |
| Subject |
595 |
373 |
595 |
|
| Annot |
|
| Sbicolor |
Sobic.003G359600.1.p|Chr03|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
222 |
1 |
222 |
e-113 |
268.5 |
87.8 |
92.8 |
| Subject |
596 |
374 |
596 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00009.1.g06350.1.sm.mk |
length: 222 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:3.80.10.10 |
no description |
1.1e-09 |
4-153 |
| HMMPanther |
PTHR23125 |
F-BOX/LEUCINE |
2.1e-115 |
1-176 |
| HMMPanther |
PTHR23125:SF94 |
SUBFAMILY |
2.1e-115 |
1-176 |
| superfamily |
SSF52047 |
RNI-like |
1.1e-10 |
8-155 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 5 | 17227833 | 17228501 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00009.1 |
maker_non_over |
exon |
2742453 |
2743121 |
. |
- |
. |
ID=Zjn_sc00009.1.g06350.1.sm.mk:exon:1 |