Z. japonica Nagirizaki
Zjn_sc00009.1.g05240.1.sm.mk ( /TE )
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G67100.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 774 7 456 2e-67 196.9 25.1 35.9
Subject 1524 5 526
Annot | Symbols: ICU2 | DNA-directed DNA polymerases | chr5:26776994-26785104 FORWARD LENGTH=1524
NR ref|XP_004970715.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 774 1 462 e-166 198.4 47.3 52.1
Subject 1536 1 540
Annot PREDICTED: DNA polymerase alpha catalytic subunit [Setaria italica]
IRGSP Os01t0868300-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 774 1 381 e-144 198.2 37.6 41.6
Subject 1534 1 378
Annot
Sbicolor Sobic.003G369200.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 774 1 462 e-156 199.1 42.5 48.7
Subject 1541 1 547
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g05240.1.sm.mk length: 774 aa.
IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain
method AccNumber shortName E-value location
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF00136 DNA_pol_B 8.7e-36 512-685
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
HMMSmart SM00486 DNA 4.1e-12 216-730
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 3.5e-07 397-456
IPR023211 DNA polymerase, palm domain
Gene3D G3DSA:3.90.1600.10 no description 3.3e-05 579-621
IPR024647 DNA polymerase alpha catalytic subunit, N-terminal domain
HMMPfam PF12254 DNA_pol_alpha_N 1.6e-20 29-96
no_ID  
Gene3D G3DSA:1.10.287.690 no description 2.6e-07 642-685
HMMPanther PTHR10322 DNA 7.4e-77 510-685
HMMPanther PTHR10322:SF3 DNA 7.4e-77 510-685
Seg seg seg NA 6-25
27-45
102-113
114-144
193-213
325-335
642-658
superfamily SSF56672 DNA/RNA 2.8e-38 511-685
Pseudomolecule
Chromosome Start End Strand
51762534717633585-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker_non_over exon 2337369 2338511 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:1
Zjn_sc00009.1 maker_non_over exon 2339136 2339219 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:2
Zjn_sc00009.1 maker_non_over exon 2339493 2339557 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:3
Zjn_sc00009.1 maker_non_over exon 2339663 2339753 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:4
Zjn_sc00009.1 maker_non_over exon 2340267 2340410 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:5
Zjn_sc00009.1 maker_non_over exon 2341450 2341767 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:6
Zjn_sc00009.1 maker_non_over exon 2341868 2341960 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:7
Zjn_sc00009.1 maker_non_over exon 2342045 2342163 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:8
Zjn_sc00009.1 maker_non_over exon 2343035 2343068 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:9
Zjn_sc00009.1 maker_non_over exon 2344619 2344732 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:10
Zjn_sc00009.1 maker_non_over exon 2344988 2345067 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:11
Zjn_sc00009.1 maker_non_over exon 2345568 2345607 . + . ID=Zjn_sc00009.1.g05240.1.sm.mk:exon:12

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