Z. japonica Nagirizaki
Zjn_sc00009.1.g04980.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G38620.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 276 1 256 3e-73 102.2 52.2 61.6
Subject 282 1 239
Annot | Symbols: ATMYB4, MYB4 | myb domain protein 4 | chr4:18053866-18054876 FORWARD LENGTH=282
NR ref|XP_002456719.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 276 1 276 e-129 97.5 85.1 89.1
Subject 269 1 269
Annot hypothetical protein SORBIDRAFT_03g041360 [Sorghum bicolor] gi|241928694|gb|EES01839.1| hypothetical protein SORBIDRAFT_03g041360 [Sorghum bicolor]
IRGSP Os01t0874300-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 276 1 276 e-106 104 79 85.5
Subject 287 1 287
Annot
Sbicolor Sobic.003G373000.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 276 1 276 e-132 97.5 85.1 89.1
Subject 269 1 269
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g04980.1.sm.mkhc length: 276 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 4.2e-15 14-61
67-111
HMMSmart SM00717 SANT 1.5e-16 13-63
66-114
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 2.9e-26 5-64
65-116
superfamily SSF46689 Homeodomain-like 8e-27 14-113
IPR017930 Myb domain
ProfileScan PS51294 HTH_MYB 17.023 62-116
9-61
no_ID  
HMMPanther PTHR10641 MYB-LIKE 1.8e-102 1-145
HMMPanther PTHR10641:SF203SUBFAMILY NOT 1.8e-102 1-145
Seg seg seg NA 149-162
173-181
212-238
Pseudomolecule
Chromosome Start End Strand
51773662617737562+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker exon 2233392 2233959 . - . ID=Zjn_sc00009.1.g04980.1.sm.mkhc:exon:2
Zjn_sc00009.1 maker exon 2234066 2234328 . - . ID=Zjn_sc00009.1.g04980.1.sm.mkhc:exon:1

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