Z. japonica Nagirizaki
Zjn_sc00009.1.g04440.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G20240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 191 1 189 6e-49 108.9 52.9 72.8
Subject 208 1 200
Annot | Symbols: PI | K-box region and MADS-box transcription factor family protein | chr5:6829203-6831208 FORWARD LENGTH=208
NR ref|XP_004970811.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 191 1 191 2e-96 109.4 94.8 96.9
Subject 209 1 209
Annot PREDICTED: MADS-box transcription factor 2 [Setaria italica]
IRGSP Os01t0883100-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 191 1 191 3e-99 109.4 94.2 97.4
Subject 209 1 209
Annot
Sbicolor Sobic.003G379000.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 191 1 191 2e-96 109.4 91.6 95.8
Subject 209 1 209
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g04440.1.sm.mk length: 191 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.6e-30 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.2e-26 9-59
HMMSmart SM00432 no description 2e-41 1-60
ProfileScan PS50066 MADS_BOX_2 32.969 1-61
superfamily SSF55455 SRF-like 2.3e-31 2-102
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.1e-14 77-143
ProfileScan PS51297 K_BOX 10.953 76-163
no_ID  
Coil coil coiled-coil NA 83-104
117-138
HMMPanther PTHR11945 MADS 2.6e-101 1-191
HMMPanther PTHR11945:SF97 AGL51, 2.6e-101 1-191
Pseudomolecule
Chromosome Start End Strand
51796916917971429-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker_non_over exon 1999525 1999712 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:1
Zjn_sc00009.1 maker_non_over exon 2000093 2000135 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:2
Zjn_sc00009.1 maker_non_over exon 2000270 2000331 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:3
Zjn_sc00009.1 maker_non_over exon 2000440 2000539 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:4
Zjn_sc00009.1 maker_non_over exon 2000769 2000813 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:5
Zjn_sc00009.1 maker_non_over exon 2001648 2001785 . + . ID=Zjn_sc00009.1.g04440.1.sm.mk:exon:6

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