Z. japonica Nagirizaki
Zjn_sc00009.1.g04200.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT4G18960.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 260 2 244 4e-74 96.9 55.8 68.8
Subject 252 18 251
Annot | Symbols: AG | K-box region and MADS-box transcription factor family protein | chr4:10383917-10388272 FORWARD LENGTH=252
NR ref|XP_004970830.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 260 1 260 e-111 103.5 81.9 91.2
Subject 269 1 269
Annot PREDICTED: MADS-box transcription factor 21 [Setaria italica] gi|514785411|ref|XP_004970831.1| PREDICTED: MADS-box transcription factor 21 [Setaria italica]
IRGSP Os01t0886200-01_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 260 1 256 e-103 101.9 75.4 85
Subject 265 1 263
Annot
Sbicolor Sobic.003G381100.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 260 1 260 e-105 106.5 78.5 88.8
Subject 277 1 277
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g04200.1.sm.mk length: 260 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 1.8e-31 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 6.6e-27 9-59
HMMSmart SM00432 no description 1.6e-40 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 33.151 1-61
superfamily SSF55455 SRF-like 1.8e-30 2-97
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.7e-30 83-174
ProfileScan PS51297 K_BOX 14.211 88-178
no_ID  
Coil coil coiled-coil NA 88-109
168-189
HMMPanther PTHR11945 MADS 2.7e-83 1-181
HMMPanther PTHR11945:SF19 MADS 2.7e-83 1-181
Seg seg seg NA 173-188
218-225
Pseudomolecule
Chromosome Start End Strand
51808879818091353+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker_non_over exon 1879601 1879870 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:7
Zjn_sc00009.1 maker_non_over exon 1879950 1879991 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:6
Zjn_sc00009.1 maker_non_over exon 1880099 1880140 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:5
Zjn_sc00009.1 maker_non_over exon 1880233 1880332 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:4
Zjn_sc00009.1 maker_non_over exon 1880435 1880499 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:3
Zjn_sc00009.1 maker_non_over exon 1880727 1880808 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:2
Zjn_sc00009.1 maker_non_over exon 1881975 1882156 . - . ID=Zjn_sc00009.1.g04200.1.sm.mk:exon:1

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