Z. japonica Nagirizaki
Zjn_sc00009.1.g03830.1.sm.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G65470.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 824 79 787 3e-97 98.9 34.7 53.3
Subject 815 15 776
Annot | Symbols: FAS1, NFB2 | chromatin assembly factor-1 (FASCIATA1) (FAS1) | chr1:24319906-24323879 REVERSE LENGTH=815
NR ref|XP_008674703.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 824 4 821 0.0 117.5 75.1 84.1
Subject 968 5 966
Annot PREDICTED: chromatin assembly factor 1 subunit FSM-like [Zea mays] gi|414879240|tpg|DAA56371.1| TPA: hypothetical protein ZEAMMB73_573569 [Zea mays]
IRGSP Os01t0896300-00_chr01_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 824 1 821 0.0 114.1 70.5 80.7
Subject 940 1 938
Annot
Sbicolor Sobic.003G387600.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 824 4 821 0.0 114.4 76.5 85.3
Subject 943 5 941
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g03830.1.sm.mk length: 824 aa.
IPR022043 Chromatin assembly factor 1 subunit A
method AccNumber shortName E-value location
HMMPfam PF12253 CAF1A 1.8e-23 530-607
no_ID  
Coil coil coiled-coil NA 267-375
HMMPfam PF11600 CAF-1_p150 8.5e-06 265-396
Seg seg seg NA 52-64
265-280
292-370
566-579
Pseudomolecule
Chromosome Start End Strand
51826556618270239+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker_non_over exon 1700715 1700836 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:11
Zjn_sc00009.1 maker_non_over exon 1700983 1701028 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:10
Zjn_sc00009.1 maker_non_over exon 1701228 1701266 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:9
Zjn_sc00009.1 maker_non_over exon 1701365 1701769 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:8
Zjn_sc00009.1 maker_non_over exon 1702202 1702333 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:7
Zjn_sc00009.1 maker_non_over exon 1702399 1702480 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:6
Zjn_sc00009.1 maker_non_over exon 1702571 1702921 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:5
Zjn_sc00009.1 maker_non_over exon 1703005 1703504 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:4
Zjn_sc00009.1 maker_non_over exon 1703927 1704053 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:3
Zjn_sc00009.1 maker_non_over exon 1704265 1704305 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:2
Zjn_sc00009.1 maker_non_over exon 1704759 1705388 . - . ID=Zjn_sc00009.1.g03830.1.sm.mk:exon:1

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