Z. japonica Nagirizaki
Zjn_sc00009.1.g00420.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G38700.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 289 4 159 2e-61 142.6 40.8 46.4
Subject 412 3 158
Annot | Symbols: MVD1, ATMVD1 | mevalonate diphosphate decarboxylase 1 | chr2:16180918-16183785 REVERSE LENGTH=412
NR gb|EEC72316.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 289 2 159 1e-79 65.1 50.2 51.2
Subject 188 4 161
Annot hypothetical protein OsI_05509 [Oryza sativa Indica Group]
IRGSP Os02t0107200-01_chr02_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 289 2 159 1e-82 65.1 50.2 51.2
Subject 188 4 161
Annot
Sbicolor Sobic.004G330600.1.p|Chr04|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 289 2 159 5e-77 145.3 50.5 52.6
Subject 420 3 160
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00009.1.g00420.1.sm.mkhc length: 289 aa.
IPR005935 Diphosphomevalonate decarboxylase
method AccNumber shortName E-value location
Molecular Function GO:0004163 diphosphomevalonate decarboxylase activity    
Biological Process GO:0008299 isoprenoid biosynthetic process    
HMMPIR PIRSF015950 Diphosphomevalonate 2e-40 2-275
HMMPanther PTHR10977 DIPHOSPHOMEVALONATE 1.6e-115 4-160
IPR006204 GHMP kinase N-terminal domain
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00288 GHMP_kinases_N 3.1e-06 114-161
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
Gene3D G3DSA:3.30.230.10 no description 1e-49 9-160
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 5.1e-38 8-191
no_ID  
Gene3D G3DSA:3.30.70.890 no description 4.7e-20 161-270
HMMPanther PTHR10977:SF2 DIPHOSPHOMEVALONATE 1.6e-115 4-160
Seg seg seg NA 50-63
124-135
198-204
superfamily SSF55060 GHMP 2.1e-16 159-285
Pseudomolecule
Chromosome Start End Strand
51978859519792084+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00009.1 maker exon 178870 179206 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:6
Zjn_sc00009.1 maker exon 179298 179419 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:5
Zjn_sc00009.1 maker exon 179840 179888 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:4
Zjn_sc00009.1 maker exon 180889 180952 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:3
Zjn_sc00009.1 maker exon 181528 181726 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:2
Zjn_sc00009.1 maker exon 182082 182359 . - . ID=Zjn_sc00009.1.g00420.1.sm.mkhc:exon:1

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