Z. japonica Nagirizaki
Zjn_sc00008.1.g11990.1.sm.mkhc
Sequence
-
BLAST
| TAIR10 |
AT3G02780.1 |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
202 |
7 |
201 |
e-100 |
140.6 |
87.1 |
94.1 |
| Subject |
284 |
57 |
284 |
|
| Annot |
| Symbols: IPP2, IPIAT1, IDI2 | isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 | chr3:602578-604648 REVERSE LENGTH=284 |
| NR |
gb|EAZ04242.1| |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
202 |
6 |
201 |
e-104 |
357.4 |
92.1 |
96 |
| Subject |
722 |
9 |
237 |
|
| Annot |
hypothetical protein OsI_26387 [Oryza sativa Indica Group] |
| IRGSP |
Os07t0546000-01_chr07_irgsp1_locus |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
202 |
6 |
202 |
e-105 |
117.8 |
92.6 |
96.5 |
| Subject |
238 |
9 |
238 |
|
| Annot |
|
| Sbicolor |
Sobic.002G330500.1.p|Chr02|gene |
|
Length |
Start |
End |
E-value |
Length(%) |
Iden(%) |
Posi(%) |
| Query |
202 |
2 |
202 |
e-106 |
117.3 |
92.6 |
97 |
| Subject |
237 |
3 |
236 |
|
| Annot |
|
InterProScan
A list of protein families, domains and functional sites (searches in
InterPro)
| Zjn_sc00008.1.g11990.1.sm.mkhc |
length: 202 aa. |
| IPR000086 |
NUDIX hydrolase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| HMMPfam |
PF00293 |
NUDIX |
5e-27 |
23-168 |
| ProfileScan |
PS51462 |
NUDIX |
17.088 |
19-171 |
| IPR011876 |
Isopentenyl-diphosphate delta-isomerase, type 1 |
| Molecular Function |
GO:0004452 |
isopentenyl-diphosphate delta-isomerase activity |
|
|
| Biological Process |
GO:0008299 |
isoprenoid biosynthetic process |
|
|
| HMMPIR |
PIRSF018427 |
Isopentenyldiphosphate |
2.5e-82 |
1-198 |
| HMMPanther |
PTHR10885 |
ISOPENTENYL-DIPHOSPHATE |
1.2e-112 |
23-201 |
| HMMTigr |
TIGR02150 |
IPP_isom_1: |
4.7e-46 |
22-172 |
| IPR015797 |
NUDIX hydrolase domain-like |
| Molecular Function |
GO:0016787 |
hydrolase activity |
|
|
| Gene3D |
G3DSA:3.90.79.10 |
no description |
4.2e-50 |
23-186 |
| superfamily |
SSF55811 |
Nudix |
4.9e-34 |
23-186 |
| no_ID |
|
| HMMPanther |
PTHR10885:SF0 |
ISOPENTENYL-DIPHOSPHATE |
1.2e-112 |
23-201 |
| Seg |
seg |
seg |
NA |
1-12 |
Pseudomolecule
| Chromosome |
Start |
End |
Strand |
| 3 | 612992 | 615844 | +
|
Coding region
| scaffold |
source |
type |
start |
end |
score |
strand |
phase |
attributes |
| Zjn_sc00008.1 |
maker |
exon |
5344623 |
5345213 |
. |
- |
. |
ID=Zjn_sc00008.1.g11990.1.sm.mkhc:exon:5 |
| Zjn_sc00008.1 |
maker |
exon |
5345377 |
5345514 |
. |
- |
. |
ID=Zjn_sc00008.1.g11990.1.sm.mkhc:exon:4 |
| Zjn_sc00008.1 |
maker |
exon |
5345609 |
5345711 |
. |
- |
. |
ID=Zjn_sc00008.1.g11990.1.sm.mkhc:exon:3 |
| Zjn_sc00008.1 |
maker |
exon |
5346413 |
5346461 |
. |
- |
. |
ID=Zjn_sc00008.1.g11990.1.sm.mkhc:exon:2 |
| Zjn_sc00008.1 |
maker |
exon |
5347411 |
5347475 |
. |
- |
. |
ID=Zjn_sc00008.1.g11990.1.sm.mkhc:exon:1 |