Z. japonica Nagirizaki
Zjn_sc00008.1.g10010.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G23250.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 4 167 5e-70 132.2 51.2 55.4
Subject 341 2 181
Annot | Symbols: | Succinyl-CoA ligase, alpha subunit | chr5:7830460-7832491 FORWARD LENGTH=341
NR ref|XP_006376608.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 33 253 5e-87 109.3 69.8 74.8
Subject 282 45 280
Annot hypothetical protein POPTR_0012s00920g [Populus trichocarpa] gi|550326105|gb|ERP54405.1| hypothetical protein POPTR_0012s00920g [Populus trichocarpa]
IRGSP Os07t0577700-01_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 2 167 4e-77 128.3 61.2 61.6
Subject 331 3 171
Annot
Sbicolor Sobic.002G352200.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 258 9 167 4e-82 146.5 59.3 60.1
Subject 378 57 218
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g10010.1.sm.mkhc length: 258 aa.
IPR003781 CoA-binding
method AccNumber shortName E-value location
Molecular Function GO:0048037 cofactor binding    
HMMPfam PF02629 CoA_binding 3.8e-32 36-129
HMMSmart SM00881 CoA 5.4e-36 34-130
IPR005810 Succinyl-CoA ligase, alpha subunit
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPIR PIRSF001553 Succinyl-CoA 2.1e-106 13-249
IPR005811 ATP-citrate lyase/succinyl-CoA ligase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
HMMPfam PF00549 Ligase_CoA 4.9e-09 162-231
IPR016040 NAD(P)-binding domain
Gene3D G3DSA:3.40.50.720 no description 1.2e-58 33-154
IPR016102 Succinyl-CoA synthetase-like
Gene3D G3DSA:3.40.50.261 no description 5.2e-33 162-247
superfamily SSF52210 Succinyl-CoA 1.8e-24 162-249
IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0003878 ATP citrate synthase activity    
Molecular Function GO:0004775 succinate-CoA ligase (ADP-forming) activity    
Biological Process GO:0008152 metabolic process    
PatternScan PS00399 SUCCINYL_COA_LIG_2 NA 196-209
no_ID  
HMMPanther PTHR11117 SUCCINYL-COA 1.3e-120 12-258
HMMPanther PTHR11117:SF0 SUBFAMILY 1.3e-120 12-258
Seg seg seg NA 24-35
108-119
superfamily SSF51735 NAD(P)-binding 1.1e-52 24-153
Pseudomolecule
Chromosome Start End Strand
315635291568969+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 4391498 4391509 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:8
Zjn_sc00008.1 maker exon 4392017 4392022 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:7
Zjn_sc00008.1 maker exon 4393041 4393171 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:6
Zjn_sc00008.1 maker exon 4393869 4393950 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:5
Zjn_sc00008.1 maker exon 4394926 4394987 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:4
Zjn_sc00008.1 maker exon 4395447 4395525 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:3
Zjn_sc00008.1 maker exon 4395884 4396093 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:2
Zjn_sc00008.1 maker exon 4396744 4396938 . - . ID=Zjn_sc00008.1.g10010.1.sm.mkhc:exon:1

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