Z. japonica Nagirizaki
Zjn_sc00008.1.g09910.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G03840.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 52 217 3e-84 92.3 24.5 27
Subject 506 40 203
Annot | Symbols: MGP | C2H2 and C2HC zinc fingers superfamily protein | chr1:967596-970058 REVERSE LENGTH=506
NR ref|XP_002460921.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 35 274 e-108 143.1 37.2 39.2
Subject 784 3 241
Annot hypothetical protein SORBIDRAFT_02g037550 [Sorghum bicolor] gi|241924298|gb|EER97442.1| hypothetical protein SORBIDRAFT_02g037550 [Sorghum bicolor]
IRGSP Os07t0581366-00_chr07_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 67 344 2e-92 115.7 34.7 37
Subject 634 45 294
Annot
Sbicolor Sobic.002G353700.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 548 35 274 e-111 143.1 37.2 39.2
Subject 784 3 241
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g09910.1.am.mkhc length: 548 aa.
IPR007087 Zinc finger, C2H2
method AccNumber shortName E-value location
Molecular Function GO:0046872 metal ion binding    
HMMPfam PF00096 zf-C2H2 0.0042 82-104
160-182
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 84-104
ProfileScan PS50157 ZINC_FINGER_C2H2_2 8.704 82-104
160-188
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 0.00016 82-104
148-181
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 63 82-104
125-155
160-180
no_ID  
Coil coil coiled-coil NA 231-253
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 2.6e-109 51-224
HMMPanther PTHR10593:SF17 SUBFAMILY 2.6e-109 51-224
Seg seg seg NA 11-30
37-51
109-123
235-252
271-287
300-313
359-380
430-442
498-514
superfamily SSF57667 C2H2 0.00011 155-198
74-109
Pseudomolecule
Chromosome Start End Strand
316375361640086+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 4320381 4321012 . - . ID=Zjn_sc00008.1.g09910.1.am.mkhc:exon:4
Zjn_sc00008.1 maker exon 4321663 4322087 . - . ID=Zjn_sc00008.1.g09910.1.am.mkhc:exon:3
Zjn_sc00008.1 maker exon 4322232 4322634 . - . ID=Zjn_sc00008.1.g09910.1.am.mkhc:exon:2
Zjn_sc00008.1 maker exon 4322745 4322931 . - . ID=Zjn_sc00008.1.g09910.1.am.mkhc:exon:1

Top