Z. japonica Nagirizaki
Zjn_sc00008.1.g09350.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT2G42200.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 670 392 553 1e-27 56 13.3 15.5
Subject 375 72 261
Annot | Symbols: SPL9, AtSPL9 | squamosa promoter binding protein-like 9 | chr2:17587601-17589451 FORWARD LENGTH=375
NR sp|A3C057.2|SPL17_ORYSJ Length Start End E-value Length(%) Iden(%) Posi(%)
Query 670 326 670 1e-95 58.7 34.5 38.2
Subject 393 17 390
Annot RecName: Full=Squamosa promoter-binding-like protein 17
IRGSP Os09t0491532-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 670 412 670 3e-80 48.2 27.5 30.6
Subject 323 22 320
Annot
Sbicolor Sobic.002G247800.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 670 320 670 2e-97 57.9 33.6 37.3
Subject 388 3 385
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g09350.1.am.mkhc length: 670 aa.
IPR004333 Transcription factor, SBP-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Gene3D G3DSA:4.10.1100.10 no description 7.3e-20 389-440
HMMPfam PF03110 SBP 7.3e-20 393-455
ProfileScan PS51141 ZF_SBP 22.769 391-455
superfamily SSF103612 SBT 1.7e-29 391-463
no_ID  
HMMPanther PTHR31251 FAMILY 3.9e-21 392-462
HMMPanther PTHR31251:SF0 SUBFAMILY 3.9e-21 392-462
Seg seg seg NA 6-18
126-140
213-232
255-279
318-325
344-393
432-444
576-594
Pseudomolecule
Chromosome Start End Strand
191538842615393835-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 4091479 4091792 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:1
Zjn_sc00008.1 maker exon 4091841 4092104 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:2
Zjn_sc00008.1 maker exon 4092213 4092953 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:3
Zjn_sc00008.1 maker exon 4094384 4094481 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:4
Zjn_sc00008.1 maker exon 4094651 4095245 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:5
Zjn_sc00008.1 maker exon 4096125 4096236 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:6
Zjn_sc00008.1 maker exon 4096401 4096571 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:7
Zjn_sc00008.1 maker exon 4096688 4096888 . + . ID=Zjn_sc00008.1.g09350.1.am.mkhc:exon:8

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