Z. japonica Nagirizaki
Zjn_sc00008.1.g09180.1.sm.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G76490.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 450 1 448 0.0 142.7 75.3 84.7
Subject 642 218 634
Annot | Symbols: HMG1, HMGR1, AtHMGR1 | hydroxy methylglutaryl CoA reductase 1 | chr1:28695801-28698206 FORWARD LENGTH=642
NR ref|NP_001130818.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 450 1 447 0.0 127.3 88.2 91.6
Subject 573 150 565
Annot hypothetical protein [Zea mays] gi|194690196|gb|ACF79182.1| unknown [Zea mays] gi|414589843|tpg|DAA40414.1| TPA: hypothetical protein ZEAMMB73_808975 [Zea mays]
IRGSP Os09t0492700-01_chr09_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 450 1 450 0.0 128 86.9 90.2
Subject 576 158 576
Annot
Sbicolor Sobic.002G250400.1.p|Chr02|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 450 1 448 0.0 129.6 88 91.3
Subject 583 155 571
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g09180.1.sm.mkhc length: 450 aa.
IPR002202 Hydroxymethylglutaryl-CoA reductase, class I/II
method AccNumber shortName E-value location
Molecular Function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity    
Biological Process GO:0015936 coenzyme A metabolic process    
Molecular Function GO:0050662 coenzyme binding    
Biological Process GO:0055114 oxidation-reduction process    
FPrintScan PR00071 HMGCOARDTASE 4.8e-25 65-86
92-112
HMMPanther PTHR10572 3-HYDROXY-3-METHYLGLUTARYL-COENZYME 2e-284 1-450
HMMPfam PF00368 HMG-CoA_red 2.1e-157 31-440
ProfileScan PS50065 HMG_COA_REDUCTASE_4 134.425 5-440
IPR009023 Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding
Biological Process GO:0015936 coenzyme A metabolic process    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Molecular Function GO:0050662 coenzyme binding    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.30.70.420 no description 1.9e-39 126-164
195-272
superfamily SSF55035 NAD-binding 1.9e-08 195-273
126-163
IPR009029 Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding
Biological Process GO:0015936 coenzyme A metabolic process    
Molecular Function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    
Molecular Function GO:0050662 coenzyme binding    
Biological Process GO:0055114 oxidation-reduction process    
superfamily SSF56542 Substrate-binding 6.5e-98 4-430
IPR023074 Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic domain
Molecular Function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:3.90.770.10 no description 1.5e-92 273-442
IPR023076 Hydroxymethylglutaryl-CoA reductase, class I/II, conserved site
Molecular Function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity    
Biological Process GO:0055114 oxidation-reduction process    
PatternScan PS00066 HMG_COA_REDUCTASE_1 NA 216-230
PatternScan PS00318 HMG_COA_REDUCTASE_2 NA 371-378
IPR023282 Hydroxymethylglutaryl-CoA reductase, N-terminal
Molecular Function GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity    
Biological Process GO:0055114 oxidation-reduction process    
Gene3D G3DSA:1.10.3270.10 no description 3.9e-25 4-75
no_ID  
Seg seg seg NA 276-290
307-318
404-422
Pseudomolecule
Chromosome Start End Strand
191545124615454470+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 4030844 4031086 . - . ID=Zjn_sc00008.1.g09180.1.sm.mkhc:exon:4
Zjn_sc00008.1 maker exon 4031844 4032190 . - . ID=Zjn_sc00008.1.g09180.1.sm.mkhc:exon:3
Zjn_sc00008.1 maker exon 4033129 4033310 . - . ID=Zjn_sc00008.1.g09180.1.sm.mkhc:exon:2
Zjn_sc00008.1 maker exon 4033488 4034068 . - . ID=Zjn_sc00008.1.g09180.1.sm.mkhc:exon:1

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