Z. japonica Nagirizaki
Zjn_sc00008.1.g08620.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G16530.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 405 55 404 e-111 86.7 48.9 62.5
Subject 351 1 351
Annot | Symbols: PIN5 | Auxin efflux carrier family protein | chr5:5400735-5402626 FORWARD LENGTH=351
NR ref|XP_004957280.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 405 55 405 e-148 89.6 75.6 79.8
Subject 363 1 363
Annot PREDICTED: probable auxin efflux carrier component 4 [Setaria italica]
IRGSP Os08t0529000-01_chr08_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 405 55 403 e-123 91.4 56.8 67.2
Subject 370 1 370
Annot
Sbicolor Sobic.003G403900.1.p|Chr03|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 405 55 404 e-109 92.8 50.6 63.2
Subject 376 1 376
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g08620.1.am.mk length: 405 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 6.5e-46 64-222
243-396
no_ID  
HMMPanther PTHR31752 FAMILY 1.2e-172 56-402
HMMPanther PTHR31752:SF0 SUBFAMILY 1.2e-172 56-402
Seg seg seg NA 101-114
125-152
197-207
329-344
351-362
Pseudomolecule
Chromosome Start End Strand
191567471615677849-
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker_non_over exon 3807465 3807600 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:1
Zjn_sc00008.1 maker_non_over exon 3807802 3808486 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:2
Zjn_sc00008.1 maker_non_over exon 3809868 3809953 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:3
Zjn_sc00008.1 maker_non_over exon 3810064 3810221 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:4
Zjn_sc00008.1 maker_non_over exon 3810342 3810418 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:5
Zjn_sc00008.1 maker_non_over exon 3810523 3810598 . + . ID=Zjn_sc00008.1.g08620.1.am.mk:exon:6

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