Z. japonica Nagirizaki
Zjn_sc00008.1.g08120.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G53120.5 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 4 330 e-131 101.1 66.8 76.9
Subject 359 3 337
Annot | Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359
NR ref|XP_004965516.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 355 e-166 109.6 86.5 92.4
Subject 389 1 389
Annot PREDICTED: spermine synthase-like [Setaria italica] gi|514764480|ref|XP_004965517.1| PREDICTED: spermine synthase-like [Setaria italica]
IRGSP Os06t0528600-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 355 e-155 109 83.4 89
Subject 387 1 387
Annot
Sbicolor Sobic.010G153900.3.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 355 1 355 e-167 109.3 86.5 92.1
Subject 388 1 388
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g08120.1.am.mkhc length: 355 aa.
IPR001045 Spermidine/spermine synthases family
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
HAMAP MF_00198 Spermidine_synth 28.490 53-348
HMMPanther PTHR11558 SPERMIDINE/SPERMINE 1.3e-162 71-352
HMMPfam PF01564 Spermine_synth 8.8e-84 57-303
HMMTigr TIGR00417 speE: 3e-82 72-300
PatternScan PS01330 SPERMIDINE_SYNTHASE_1 NA 139-152
ProfileScan PS51006 SPERMIDINE_SYNTHASE_2 88.008 55-348
no_ID  
Gene3D G3DSA:2.30.140.10 no description 5.4e-23 44-112
Gene3D G3DSA:3.40.50.150 no description 1.1e-80 117-330
HMMPanther PTHR11558:SF11 SPERMIDINE 1.3e-162 71-352
Seg seg seg NA 3-16
139-150
superfamily SSF53335 S-adenosyl-L-methionine-dependent 6.6e-79 58-348
Pseudomolecule
Chromosome Start End Strand
191589701315900413+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 3584901 3585219 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:9
Zjn_sc00008.1 maker exon 3585590 3585719 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:8
Zjn_sc00008.1 maker exon 3585862 3586057 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:7
Zjn_sc00008.1 maker exon 3586435 3586506 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:6
Zjn_sc00008.1 maker exon 3586656 3586728 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:5
Zjn_sc00008.1 maker exon 3586816 3586920 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:4
Zjn_sc00008.1 maker exon 3587058 3587180 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:3
Zjn_sc00008.1 maker exon 3587266 3587342 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:2
Zjn_sc00008.1 maker exon 3588088 3588301 . - . ID=Zjn_sc00008.1.g08120.1.am.mkhc:exon:1

Top