Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00008.1.g06540.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00008.1)

BLAST

TAIR10	AT4G38130.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	445	8	421	0.0	112.6	73.5	79.8
		Subject	501	4	403
		Annot	\| Symbols: HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 \| histone deacetylase 1 \| chr4:17896493-17899057 REVERSE LENGTH=501
NR	ref\|XP_002438614.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	445	1	445	0.0	116.4	88.1	91.9
		Subject	518	1	518
		Annot	hypothetical protein SORBIDRAFT_10g022820 [Sorghum bicolor] gi\|241916837\|gb\|EER89981.1\| hypothetical protein SORBIDRAFT_10g022820 [Sorghum bicolor]
IRGSP	Os06t0583400-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	445	1	444	0.0	116.4	87.4	93
		Subject	518	1	517
		Annot
Sbicolor	Sobic.010G176300.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	445	1	445	0.0	127.2	88.1	91.9
		Subject	566	49	566
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000286	Histone deacetylase superfamily
Zjn_sc00008.1.g06540.1.sm.mkhc				length: 445 aa.
method	AccNumber	shortName	E-value	location
FPrintScan	PR01270	HDASUPER	1.1e-23	149-172 181-196 266-276
HMMPanther	PTHR10625	HISTONE	2.2e-262	20-443
IPR003084	Histone deacetylase
Molecular Function	GO:0004407	histone deacetylase activity
Biological Process	GO:0016575	histone deacetylation
FPrintScan	PR01271	HISDACETLASE	9.1e-59	43-60 76-94 107-124 128-148 168-184 227-240 244-262
HMMPIR	PIRSF037913	Histone	8.7e-275	20-444
IPR023801	Histone deacetylase domain
Gene3D	G3DSA:3.40.800.20	no description	3.5e-121	22-381
HMMPfam	PF00850	Hist_deacetyl	2e-78	38-330
no_ID
HMMPanther	PTHR10625:SF28	HISTONE	2.2e-262	20-443
superfamily	SSF52768	Arginase/deacetylase	1.2e-125	22-389

Pseudomolecule

Chromosome	Start	End	Strand
19	16696968	16703469	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00008.1	maker	exon	2781845	2782384	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:1
Zjn_sc00008.1	maker	exon	2782478	2782918	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:2
Zjn_sc00008.1	maker	exon	2783079	2783175	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:3
Zjn_sc00008.1	maker	exon	2783222	2783309	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:4
Zjn_sc00008.1	maker	exon	2786763	2786826	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:5
Zjn_sc00008.1	maker	exon	2787652	2788346	.	+	.	ID=Zjn_sc00008.1.g06540.1.sm.mkhc:exon:6