Z. japonica Nagirizaki
Zjn_sc00008.1.g06260.1.am.mkhc
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT1G04240.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 17 176 2e-24 79.4 29 41.6
Subject 189 5 185
Annot | Symbols: SHY2, IAA3 | AUX/IAA transcriptional regulator family protein | chr1:1128564-1129319 REVERSE LENGTH=189
NR gb|EMS51633.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 1 176 3e-64 82.4 56.3 60.9
Subject 196 1 174
Annot Auxin-responsive protein IAA23 [Triticum urartu]
IRGSP Os06t0597000-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 1 176 5e-52 81.1 50 56.3
Subject 193 1 186
Annot
Sbicolor Sobic.010G180600.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 238 16 154 1e-55 78.2 47.9 49.6
Subject 186 18 155
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g06260.1.am.mkhc length: 238 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.2e-37 38-155
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 17.599 78-154
no_ID  
HMMPanther PTHR31734 FAMILY 8.1e-56 2-154
Seg seg seg NA 2-15
17-28
34-48
191-207
superfamily SSF54277 CAD 9.3e-12 65-156
Pseudomolecule
Chromosome Start End Strand
191682859216830274+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker exon 2655040 2655842 . - . ID=Zjn_sc00008.1.g06260.1.am.mkhc:exon:4
Zjn_sc00008.1 maker exon 2655923 2656035 . - . ID=Zjn_sc00008.1.g06260.1.am.mkhc:exon:3
Zjn_sc00008.1 maker exon 2656115 2656418 . - . ID=Zjn_sc00008.1.g06260.1.am.mkhc:exon:2
Zjn_sc00008.1 maker exon 2656565 2656722 . - . ID=Zjn_sc00008.1.g06260.1.am.mkhc:exon:1

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