Z. japonica Nagirizaki
Zjn_sc00008.1.g04940.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 No_hits
NR ref|XP_002437308.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 111 464 1e-59 85 33.1 41.1
Subject 414 4 354
Annot hypothetical protein SORBIDRAFT_10g024600 [Sorghum bicolor] gi|241915531|gb|EER88675.1| hypothetical protein SORBIDRAFT_10g024600 [Sorghum bicolor]
IRGSP Os10t0391200-00_chr10_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 131 464 1e-23 101 22.6 31
Subject 492 148 455
Annot
Sbicolor Sobic.010G196800.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 487 111 464 1e-62 85 33.1 41.1
Subject 414 4 354
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g04940.1.am.mk length: 487 aa.
IPR001810 F-box domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00646 F-box 7.9e-08 129-161
129-161
HMMSmart SM00256 A 0.00016 129-169
129-169
ProfileScan PS50181 FBOX 9.206 123-160
123-160
superfamily SSF81383 F-box 3.8e-10 116-197
116-197
no_ID  
Gene3D G3DSA:1.20.1280.50 no description 4.7e-07 128-165
128-165
Seg seg seg NA 81-105
107-119
170-197
214-229
81-105
107-119
170-197
214-229
Pseudomolecule
Chromosome Start End Strand
191739229317394723+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker_non_over exon 2090591 2091198 . - . ID=Zjn_sc00008.1.g04940.1.am.mk:exon:4
Zjn_sc00008.1 maker_non_over exon 2091545 2091648 . - . ID=Zjn_sc00008.1.g04940.1.am.mk:exon:3
Zjn_sc00008.1 maker_non_over exon 2092163 2092610 . - . ID=Zjn_sc00008.1.g04940.1.am.mk:exon:2
Zjn_sc00008.1 maker_non_over exon 2092718 2093021 . - . ID=Zjn_sc00008.1.g04940.1.am.mk:exon:1

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