Zoysia Genome Database

Z. japonica Nagirizaki

Zjn_sc00008.1.g03590.1.sm.mkhc

Sequence

Transcript sequence

Predicted nucleotide sequence (cds)
Predicted translated sequence (pep)

Genome sequence (Zjn_sc00008.1)

BLAST

TAIR10	AT3G21240.1		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	591	4	529	0.0	94.1	56	68.9
		Subject	556	8	556
		Annot	\| Symbols: 4CL2, AT4CL2 \| 4-coumarate:CoA ligase 2 \| chr3:7454497-7457314 REVERSE LENGTH=556
NR	ref\|XP_004965684.1\|		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	591	1	532	0.0	93.7	80	84.1
		Subject	554	1	549
		Annot	PREDICTED: probable 4-coumarate--CoA ligase 4 [Setaria italica]
IRGSP	Os06t0656500-01_chr06_irgsp1_locus		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	591	1	533	0.0	94.6	77	83.4
		Subject	559	1	556
		Annot
Sbicolor	Sobic.010G214900.1.p\|Chr10\|gene		Length	Start	End	E-value	Length(%)	Iden(%)	Posi(%)
		Query	591	1	533	0.0	94.2	80.7	84.3
		Subject	557	1	554
		Annot

InterProScan

A list of protein families, domains and functional sites (searches in InterPro)

IPR000873	AMP-dependent synthetase/ligase
Zjn_sc00008.1.g03590.1.sm.mkhc				length: 591 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0008152	metabolic process
HMMPfam	PF00501	AMP-binding	1.3e-98	47-449
IPR020845	AMP-binding, conserved site
PatternScan	PS00455	AMP_BINDING	NA	193-204
IPR025110	AMP-binding enzyme C-terminal domain
HMMPfam	PF13193	AMP-binding_C	1.6e-08	458-522
no_ID
Gene3D	G3DSA:2.30.38.10	no description	2.6e-28	365-440
Gene3D	G3DSA:3.30.300.30	no description	3.4e-05	446-491 494-533
Gene3D	G3DSA:3.40.50.980	no description	2.4e-44	46-198 199-353
HMMPanther	PTHR24096	FAMILY	6.9e-235	16-524
HMMPanther	PTHR24096:SF16	SUBFAMILY	6.9e-235	16-524
Seg	seg	seg	NA	67-87 102-114 153-165 171-194
superfamily	SSF56801	Acetyl-CoA	8.6e-155	33-526

Pseudomolecule

Chromosome	Start	End	Strand
19	17942648	17949031	-

Coding region

scaffold	source	type	start	end	score	strand	phase	attributes
Zjn_sc00008.1	maker	exon	1536283	1537019	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:1
Zjn_sc00008.1	maker	exon	1537345	1537698	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:2
Zjn_sc00008.1	maker	exon	1538265	1538463	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:3
Zjn_sc00008.1	maker	exon	1540648	1540861	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:4
Zjn_sc00008.1	maker	exon	1540965	1541007	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:5
Zjn_sc00008.1	maker	exon	1541420	1541550	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:6
Zjn_sc00008.1	maker	exon	1542492	1542666	.	+	.	ID=Zjn_sc00008.1.g03590.1.sm.mkhc:exon:7