Z. japonica Nagirizaki
Zjn_sc00008.1.g03420.1.am.mk
Sequence
Init: Term:
reverse complement
BLAST
TAIR10 AT5G57090.1 Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1065 383 938 e-156 60.8 31.5 36.8
Subject 647 1 612
Annot | Symbols: EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | Auxin efflux carrier family protein | chr5:23100765-23104456 FORWARD LENGTH=647
NR ref|XP_004965663.1| Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1065 383 938 0.0 59.1 46.8 48.5
Subject 629 1 594
Annot PREDICTED: probable auxin efflux carrier component 2 [Setaria italica]
IRGSP Os06t0660200-01_chr06_irgsp1_locus Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1065 383 938 0.0 59.2 44.2 46.6
Subject 630 1 595
Annot
Sbicolor Sobic.010G216700.1.p|Chr10|gene Length Start End E-value Length(%) Iden(%) Posi(%)
Query 1065 383 938 0.0 58.8 46.6 48.1
Subject 626 1 591
Annot

InterProScan
A list of protein families, domains and functional sites (searches in InterPro)

Zjn_sc00008.1.g03420.1.am.mk length: 1065 aa.
IPR004776 Auxin efflux carrier
method AccNumber shortName E-value location
Cellular Component GO:0016021 integral to membrane    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF03547 Mem_trans 9.1e-100 392-929
392-929
IPR014024 Auxin efflux carrier, plant type
HMMTigr TIGR00946 2a69: 3.4e-87 383-930
383-930
no_ID  
HMMPanther PTHR31752 FAMILY 9.1e-192 384-928
384-928
HMMPanther PTHR31752:SF0 SUBFAMILY 9.1e-192 384-928
384-928
Seg seg seg NA 38-47
312-318
360-371
587-602
690-700
740-757
38-47
312-318
360-371
587-602
690-700
740-757
Pseudomolecule
Chromosome Start End Strand
191802638918035301+
Coding region
scaffold source type start end score strand phase attributes
Zjn_sc00008.1 maker_non_over exon 1450013 1450113 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:16
Zjn_sc00008.1 maker_non_over exon 1450285 1450383 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:15
Zjn_sc00008.1 maker_non_over exon 1450750 1450798 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:14
Zjn_sc00008.1 maker_non_over exon 1451060 1451224 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:13
Zjn_sc00008.1 maker_non_over exon 1452034 1452147 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:12
Zjn_sc00008.1 maker_non_over exon 1452582 1452669 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:11
Zjn_sc00008.1 maker_non_over exon 1452992 1453298 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:10
Zjn_sc00008.1 maker_non_over exon 1453402 1453574 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:9
Zjn_sc00008.1 maker_non_over exon 1453688 1454562 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:8
Zjn_sc00008.1 maker_non_over exon 1454596 1454752 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:7
Zjn_sc00008.1 maker_non_over exon 1456215 1456416 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:6
Zjn_sc00008.1 maker_non_over exon 1456497 1456696 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:5
Zjn_sc00008.1 maker_non_over exon 1456740 1456987 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:4
Zjn_sc00008.1 maker_non_over exon 1457296 1457600 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:3
Zjn_sc00008.1 maker_non_over exon 1458743 1458776 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:2
Zjn_sc00008.1 maker_non_over exon 1458845 1458925 . - . ID=Zjn_sc00008.1.g03420.1.am.mk:exon:1

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